View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14473_high_15 (Length: 469)

Name: NF14473_high_15
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14473_high_15
NF14473_high_15
[»] chr5 (1 HSPs)
chr5 (17-453)||(36199293-36199730)
[»] chr7 (2 HSPs)
chr7 (43-269)||(28449405-28449631)
chr7 (117-172)||(12635951-12636006)
[»] chr1 (2 HSPs)
chr1 (17-264)||(48675085-48675332)
chr1 (104-177)||(41662527-41662600)
[»] chr2 (6 HSPs)
chr2 (66-169)||(410494-410600)
chr2 (121-176)||(996740-996795)
chr2 (118-204)||(821405-821491)
chr2 (118-178)||(973725-973785)
chr2 (118-172)||(1403805-1403859)
chr2 (236-293)||(821523-821579)
[»] chr3 (3 HSPs)
chr3 (122-168)||(43360019-43360065)
chr3 (118-172)||(45810203-45810257)
chr3 (240-287)||(45810090-45810135)


Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 453
Target Start/End: Original strand, 36199293 - 36199730
Alignment:
Q  17 agaaagttgggtggatccaaaatccactccacaatttctttcattatatcttagaacttgcactattcaggacttcgcttttgtagacctacaacacgac 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36199293 agaaaattgggtggatccaaaatccactccacaatttctttcattatatcttagaacttgcactattcgggacttcgcttttgtagacctacaacacgac 36199392  T
Q  117 cttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaatatggagtgacaaagaacaacctcaaatagaaaaggaactatcct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36199393 cttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaatatggagtgacaaagaacaacctcaaatagaaaaggaactatcct 36199492  T
Q  217 taactccaatggcatcaaaaacttgtcaactttcagtttattgataacatataagatatatgtaagtagtagttttctttcatgtccgttgtttcgtaag 316  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36199493 taattccaatggcatcaaaaacttgtcaactttcagtttattgataacatataagatatatgtaagtagtagttttctttcatgtccgttgtttcgtaag 36199592  T
Q  317 attctaccataaaattgttgaatttgatggtttgagctatgaatatcatacacaatgtaattac-acttatgcaaaactttgatggtcaatttcaataca 415  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  36199593 tttctaccataaaattgttgaatttgatggtttgagctatgaatatcatagacaatgtaattactacttatgcaaaactttgatggtcaatttcaacaca 36199692  T
Q  416 gagttaatcaaataagattatgtaaaatactcttcaat 453  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  36199693 gagttaatcaaataagaatatgtaaaatactcttcaat 36199730  T

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Target: chr7 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 43 - 269
Target Start/End: Complemental strand, 28449631 - 28449405
Alignment:
Q  43 ctccacaatttctttcattatatcttagaacttgcactattcaggacttcgcttttgtagacctacaacacgaccttatgttagcaagatatattctaaa 142  Q
    |||||||||  || |||||| |||||| |||||||||||||| |||||| || ||||||||||||||| | ||| ||||| |||||||||||||||| ||    
T  28449631 ctccacaatgcctctcattacatcttacaacttgcactattcgggactttgcatttgtagacctacaaaatgacattatgctagcaagatatattcttaa 28449532  T
Q  143 taatgcaagagttttacaaactatgacaatatggagtgacaaagaacaacctcaaatagaaaaggaactatccttaactccaatggcatcaaaaacttgt 242  Q
    ||||||||||||||||||||| ||||  ||||||||||| |||||||||||||||||||||| |||| |||||| |  ||||| |||||| | |||||||    
T  28449531 taatgcaagagttttacaaaccatgatgatatggagtgataaagaacaacctcaaatagaaagggaattatcctcatgtccaagggcatccacaacttgt 28449432  T
Q  243 caactttcagtttattgataacatata 269  Q
    |||||||||||||||||||||| ||||    
T  28449431 caactttcagtttattgataacgtata 28449405  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 12635951 - 12636006
Alignment:
Q  117 cttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaat 172  Q
    |||||| ||||||| |||||| | || |||||||||||||||||||| ||||||||    
T  12635951 cttatgctagcaaggtatattttgaagaatgcaagagttttacaaaccatgacaat 12636006  T

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Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 48675332 - 48675085
Alignment:
Q  17 agaaagttgggtggatccaaaatccactccacaatttctttcattatatcttagaacttgcactattcaggacttcgcttttgtagacctacaacacgac 116  Q
    ||||||||||||||| || || | | |||||||||  |||  ||||| ||||||||| |||||||||| ||||||  | |||   |||||||| ||  |     
T  48675332 agaaagttgggtggaccctaagttccctccacaatgccttcaattatctcttagaacctgcactattcgggactttacctttagtgacctacagcataat 48675233  T
Q  117 cttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaatatggagtgacaaagaacaacctcaaatagaaaaggaactatcct 216  Q
     ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| || |||||||||||||||| |||| ||||||    
T  48675232 attatgttagcaagatatattctaaataatgcaaaagttttacaaactatgacaatatggagcgacaaggaccaacctcaaatagaaagggaattatcct 48675133  T
Q  217 taactccaatggcatcaaaaacttgtcaactttcagtttattgataac 264  Q
     |  ||||| ||| ||   ||| |||||||||||||||||||||||||    
T  48675132 catgtccaagggcctctgcaacatgtcaactttcagtttattgataac 48675085  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 41662600 - 41662527
Alignment:
Q  104 cctacaacacgaccttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaatatgga 177  Q
    ||||||| |||| |||||| ||||||| ||| || | || |||||||||||||||||||| |||| ||| ||||    
T  41662600 cctacaagacgagcttatgctagcaaggtatgttttgaagaatgcaagagttttacaaaccatgaaaatctgga 41662527  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 169
Target Start/End: Original strand, 410494 - 410600
Alignment:
Q  66 cttagaacttgcactattcaggacttcgcttttgtagacctacaacacg---accttatgttagcaagatatattctaaataatgcaagagttttacaaa 162  Q
    |||| |||||||||||||| ||||||||| |||| || |||||||||     || |||||||||||| || ||||||||| |||||||||||||||| ||    
T  410494 cttacaacttgcactattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaatgcaagagttttacgaa 410593  T
Q  163 ctatgac 169  Q
    |||||||    
T  410594 ctatgac 410600  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 996795 - 996740
Alignment:
Q  121 tgttagcaagatatattctaaataatgcaagagttttacaaactatgacaatatgg 176  Q
    |||||||||||||||||||||| ||||||||| |||||||||| |||| |||||||    
T  996795 tgttagcaagatatattctaaagaatgcaagacttttacaaaccatgaaaatatgg 996740  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 821405 - 821491
Alignment:
Q  118 ttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaatatggagtgacaaagaacaacctcaaatagaaa 204  Q
    |||||||||||| || |||||| || ||||| ||||||||| ||||||||||||| |||||  ||||  ||||| || |||||||||    
T  821405 ttatgttagcaatatttattctgaagaatgcgagagttttagaaactatgacaatctggagcaacaataaacaatctgaaatagaaa 821491  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 973785 - 973725
Alignment:
Q  118 ttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaatatggag 178  Q
    ||||||||||||||| ||||||  | || |||||||||||||||||||||| ||| |||||    
T  973785 ttatgttagcaagatttattctggagaacgcaagagttttacaaactatgaaaatctggag 973725  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 1403805 - 1403859
Alignment:
Q  118 ttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaat 172  Q
    ||||||||||||| | ||||||  ||||||||||||||||| |||||||| ||||    
T  1403805 ttatgttagcaaggtttattctggataatgcaagagttttagaaactatgtcaat 1403859  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 821523 - 821579
Alignment:
Q  236 aacttgtcaactttcagtttattgataacatataagatatatgtaagtagtagttttc 293  Q
    ||| |||||||||||| ||||||||||||||||| ||| |||||||||| || |||||    
T  821523 aacatgtcaactttcattttattgataacatatacgat-tatgtaagtattatttttc 821579  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 43360019 - 43360065
Alignment:
Q  122 gttagcaagatatattctaaataatgcaagagttttacaaactatga 168  Q
    |||||||| ||| ||||| ||||||||||||||||| ||||||||||    
T  43360019 gttagcaacatacattcttaataatgcaagagttttgcaaactatga 43360065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 45810257 - 45810203
Alignment:
Q  118 ttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaat 172  Q
    ||||||||||||| | |||||| || ||||||| ||||||| |||||||||||||    
T  45810257 ttatgttagcaaggtttattctgaagaatgcaaaagttttagaaactatgacaat 45810203  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 45810135 - 45810090
Alignment:
Q  240 tgtcaactttcagtttattgataacatataagatatatgtaagtagta 287  Q
    |||||||||||| ||||||||||||||||| |  ||||||||||||||    
T  45810135 tgtcaactttcaatttattgataacatatatg--atatgtaagtagta 45810090  T

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