View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_high_17 (Length: 466)
Name: NF14473_high_17
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 112 - 448
Target Start/End: Complemental strand, 47884195 - 47883858
Alignment:
| Q |
112 |
tatttaagggttgagatttaataaataaagaaattatgtcctcttgttccctcttcctctgtacgcacgaccactttgcccacttcctctcaacgccgcc |
211 |
Q |
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| T |
47884195 |
tatttaagggttgagatttaataaataaagaaattatgtcctcttgttccctcttcctctgtacgcacgaccactttgcccactttctctcaacgccgcc |
47884096 |
T |
|
| Q |
212 |
gccaccatcaacttccgtccaccaccatcaatcacaactcctatctcttccccttcctcttatttctcccattgttgctgttatttatttttcaaaacaa |
311 |
Q |
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| T |
47884095 |
gccaccatcaacttccgtccaccaccatcaatcacaactcctatctcttccccttcctcttatttctcccattgttgctgttatttatttttcaaaacaa |
47883996 |
T |
|
| Q |
312 |
atgtctggaatttggttacaaaatccatgtcatgtgagaattaaaa-ccccatagtaacgcatcttctctgaagggagaaagaaaaaacgtaagaaagtg |
410 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47883995 |
atgtctggaatttggttacaaaatccatgtcatgagagaattaaaacccccatagtaacgcatcttctctgaagggagaaataaaaaacgtaagaaagtg |
47883896 |
T |
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| Q |
411 |
aggaaatgaaatcaatagcttgcgatggatctgaagag |
448 |
Q |
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| T |
47883895 |
aggaaatgaaatcaatagcttgcgatggatctgaagag |
47883858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 47884282 - 47884233
Alignment:
| Q |
40 |
attttaaggtatgaaaggtggtataaatgagtccggttatgctccattta |
89 |
Q |
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| T |
47884282 |
attttaaggtatgaaaggtggtataaattagtccggatatgctccattta |
47884233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 298 - 448
Target Start/End: Original strand, 38386758 - 38386899
Alignment:
| Q |
298 |
atttttcaaaacaaatgtctggaatttggttacaaaatccatgtcatgtgagaattaaaaccccatagtaacgcatcttctctgaagggagaaagaaaaa |
397 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | |
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| T |
38386758 |
atttttcaaaacaaatgtctggaattttgttccaaaatccatgtcacgtgagaattaaaaccccatagtaacgcatcttctct-----------gaaaga |
38386846 |
T |
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| Q |
398 |
acgtaagaaagtgaggaaatgaaatcaatagctt--gcgatggatctgaagag |
448 |
Q |
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| T |
38386847 |
acgtaagaaagtgagaaaatgaaatcaagagctttagcgatggatctgaagag |
38386899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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