View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_high_19 (Length: 454)
Name: NF14473_high_19
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 8185798 - 8186234
Alignment:
| Q |
1 |
caatacgcatggccgatttattgtcacaaaacagcttcagaacattgtattttcaaatcttctagctgaagtttcatccataagtggttaattacattaa |
100 |
Q |
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| T |
8185798 |
caatactcatggccgatttattgtcacaaaacagcttcagaacattgtattttcaaatcttctagctgaagtttcatccataagtggttaattacattaa |
8185897 |
T |
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| Q |
101 |
tttcttgtacttgtatcaaaagcatattaaacatatttttagcttacttgttcatgaattacctgaatttcaactttccaagctaatcgattctatatgt |
200 |
Q |
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| T |
8185898 |
tttcttgtacttgtatcaaaagcatattaaacatatttttagcttacttgttcatgaattacctgaatttcaactttccaagctaattgattctatatgt |
8185997 |
T |
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| Q |
201 |
tatgttgaggagactatgaaccaaacaactcatttgaattnnnnnnncattaagggggaaaaactaatcaaagcattattttgcaatgtttaccatcaga |
300 |
Q |
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| T |
8185998 |
tatgttgaggagactatgaaccaaacaactcatttgaattaaaaaaacattaagggggaaaaactaatcaaagcattattttgcaatgtttaccatcaga |
8186097 |
T |
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| Q |
301 |
agggaatctacatcaaatctaccacttgattgtgctaccaagtcatttaaaataatgcagcatggtttgtaattcatgcttacttccttctttcgcaatt |
400 |
Q |
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| T |
8186098 |
agggaatctacatcaaatctaccacttgattgtgctaccaagtcatttaaaataatgcagcatggtttgtaattcatgcttacttccttctttcgcaatt |
8186197 |
T |
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| Q |
401 |
cgaaaaaaccaaccagctaaagacttacgttcatgct |
437 |
Q |
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| T |
8186198 |
cgaaaaaaccaaccagctaaagacttacgttcatgct |
8186234 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 368
Target Start/End: Complemental strand, 1056879 - 1056790
Alignment:
| Q |
279 |
ttttgcaatgtttaccatcagaagggaatctacatcaaatctaccacttgattgtgctaccaagtcatttaaaataatgcagcatggttt |
368 |
Q |
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| T |
1056879 |
ttttgcaatgttttcaatcagcagagcatctacatcaaatccaccacttgtttgttctaccaagtcacttaaaagattggagcatggttt |
1056790 |
T |
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