View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_high_3 (Length: 636)
Name: NF14473_high_3
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 599; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 16 - 618
Target Start/End: Original strand, 43939613 - 43940215
Alignment:
| Q |
16 |
atcacataccataccataatttagctagcctaaactagtaaagatctaattaaagagaaaaagaataaggaacatagacttttgttaataccgggcttct |
115 |
Q |
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| T |
43939613 |
atcacataccataccataatttagctagcctaaactagtaaagatctaattaaagagaaaaagaataaggaacatagaattttgttaataccgggcttct |
43939712 |
T |
|
| Q |
116 |
aacaatgattgaaggtttagcaccaaaattagccaaatctaaagcaatctccataccagaattaccagaaccaacaacaagaacatgttcatctttaaac |
215 |
Q |
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| T |
43939713 |
aacaatgattgaaggtttagcaccaaaattagccaaatctaaagcaatctccataccagaattaccagaaccaacaacaagaacatgttcatctttaaac |
43939812 |
T |
|
| Q |
216 |
tcttttccatttttgtacctagttgaatgaattactttccctttgaaattctccaacccttcaaccacaggtacacgaggttcagctgtttcaccactag |
315 |
Q |
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| T |
43939813 |
tcttttccatttttgtacctagttgaatgaattactttccctttgaaattctccaacccttcaaccacaggtacacgaggttcagctgtttcaccactag |
43939912 |
T |
|
| Q |
316 |
caacaaccaagaaccttgcagaatactcctcaacttcaccagaactcttattctcagctttaaccctccatttcttctcatcatcatcaacatactctgc |
415 |
Q |
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| T |
43939913 |
caacaaccaagaaccttgcagaatactcctcaacttcaccagaactcttattctcagctttaaccctccatttcttctcatcatcatcaacatactctgc |
43940012 |
T |
|
| Q |
416 |
taactcaacagctctgttgtatatagggttgatgttgaagttgttgacatagttacctaaatattctatgaactgttttttgggtacatagtgaggataa |
515 |
Q |
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| T |
43940013 |
taactcaacagctctgttgtatatagggttgatgttgaagttgttgacatagttacctaaatattctatgaactgttttttgggtacatagtgaggataa |
43940112 |
T |
|
| Q |
516 |
gaaggtggaaaaggaaagtgtggtaactcacaaagttgttttcttagatgaagatgaacacgatcataggtgtaattttgccatagagaagcaaaacagt |
615 |
Q |
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| T |
43940113 |
gaaggtggaaaaggaaagtgtggtaactcacaaagttgttttcttagatgaagatgaacacgatcataggtgtaattttgccatagagaagcaaaacagt |
43940212 |
T |
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| Q |
616 |
ttt |
618 |
Q |
| |
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||| |
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| T |
43940213 |
ttt |
43940215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 159 - 390
Target Start/End: Original strand, 43927847 - 43928078
Alignment:
| Q |
159 |
gcaatctccataccagaattaccagaaccaacaacaagaacatgttcatctttaaactcttttccatttttgtacctagttgaatgaattactttccctt |
258 |
Q |
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| T |
43927847 |
gcaatttccataccagaattcccagacccaacaacaagaacatgttcatctttaaactctttcccattcttaaacccagttgaatgaatcactttcccag |
43927946 |
T |
|
| Q |
259 |
tgaaattctccaacccttcaaccacaggtacacgaggttcagctgtttcaccactagcaacaaccaagaaccttgcagaatactcctcaacttcaccaga |
358 |
Q |
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| T |
43927947 |
taaaactcttcaacccatcaatttcaggtacaaaagggtcactagtttcaccactagctacaaccaaaaaccttccttcatattcctcaacctcaccaga |
43928046 |
T |
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| Q |
359 |
actcttattctcagctttaaccctccatttct |
390 |
Q |
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| T |
43928047 |
ttccttattcttagccttcaccttccatttct |
43928078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 510 - 618
Target Start/End: Original strand, 43928195 - 43928303
Alignment:
| Q |
510 |
ggataagaaggtggaaaaggaaagtgtggtaactcacaaagttgttttcttagatgaagatgaacacgatcataggtgtaattttgccatagagaagcaa |
609 |
Q |
| |
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||| ||||||||||||| || ||| || | |||||||| ||||||| | || |||||||||| ||||||||| | || |||| |||||| ||||||| |
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| T |
43928195 |
ggaaaagaaggtggaaatggtttgtgaggaagctcacaaaattgttttttgaggtgaagatgaagacgatcatatgaatattttttccatagtgaagcaa |
43928294 |
T |
|
| Q |
610 |
aacagtttt |
618 |
Q |
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|||| |||| |
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| T |
43928295 |
aacaatttt |
43928303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 156 - 368
Target Start/End: Complemental strand, 15608285 - 15608069
Alignment:
| Q |
156 |
aaagcaatctccataccagaattaccagaaccaacaacaagaacatg----ttcatctttaaactcttttccatttttgtacctagttgaatgaattact |
251 |
Q |
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|||||| | ||||| |||||||| ||||| ||||||| ||||||||| |||||||||||||||||| |||| || ||| |||||||||||| ||| |
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| T |
15608285 |
aaagcagtttccatgccagaattcccagatccaacaaaaagaacatgttaattcatctttaaactctttctcattcttaaacccagttgaatgaatcact |
15608186 |
T |
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| Q |
252 |
ttccctttgaaattctccaacccttcaaccacaggtacacgaggttcagctgtttcaccactagcaacaaccaagaaccttgcagaatactcctcaactt |
351 |
Q |
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| T |
15608185 |
tccccattgcatctcttctacccttcaatttcaggcagaaaaggttcactagtttcgccactagccattaccaaaaaccttccatcatattcctcaactt |
15608086 |
T |
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| Q |
352 |
caccagaactcttattc |
368 |
Q |
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|||||||| ||||||| |
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| T |
15608085 |
caccagaatccttattc |
15608069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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