View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_high_30 (Length: 366)
Name: NF14473_high_30
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 82 - 346
Target Start/End: Original strand, 10860571 - 10860832
Alignment:
| Q |
82 |
atgtgatggagattgtatgagctgacaagttttgaggagtgggcagcagcaatgggggaagcagagggtaacagtgtnnnnnnnctttgaatctgttgnn |
181 |
Q |
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| T |
10860571 |
atgtgatggagattgtatgagctgacaagttttgaggagtgggcagcagcagtgggggaagcagagggtaacagtataagaaaactttgaatctgtt--- |
10860667 |
T |
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| Q |
182 |
nnnnngcttaaactcaaaaccaaaaccatgttgttatcatcagaatcaacttcttgtgcaatagaatcagtgcatacactacgagaagcattcttgtatc |
281 |
Q |
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| T |
10860668 |
tttttgcttaaactcaaaaccaaaaccatgttgttatcatcagaatcaacttcttgtgcaatagaatcagtgcatacactacgagaagcatccttgtatc |
10860767 |
T |
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| Q |
282 |
tataccttggaggaaaaccatgcttgaagtagcatgtgtcacgagcatgattagtgccattacaa |
346 |
Q |
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| T |
10860768 |
tataccttggaggaaaaccatgcttgaagtagcatgtatcaagagcatgattagtgtcattacaa |
10860832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 214 - 322
Target Start/End: Original strand, 10905742 - 10905850
Alignment:
| Q |
214 |
gttatcatcagaatcaacttcttgtgcaatagaatcagtgcatacactacgagaagcattcttgtatctataccttggaggaaaaccatgcttgaagtag |
313 |
Q |
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| T |
10905742 |
gttatcattagaatcaactttttatgcaacagaaacagtgcattccttatgagcagacttcttgaatataaaccttggaggaaaaccatgcttgaagtag |
10905841 |
T |
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| Q |
314 |
catgtgtca |
322 |
Q |
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| T |
10905842 |
catgtgtca |
10905850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 10860529 - 10860564
Alignment:
| Q |
18 |
aaagaatgtgatcagtagcttctgaatgtaaaattt |
53 |
Q |
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| T |
10860529 |
aaagaatgtgatcagtagcttctgaatgtaaaattt |
10860564 |
T |
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