View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_high_31 (Length: 365)
Name: NF14473_high_31
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 6457230 - 6457570
Alignment:
| Q |
18 |
taaacaggtgaagaggttggattctgcccaattgattgacttagaattcacacttggaaggcctaattggggaaaagaccatgctgaatcatcaagagaa |
117 |
Q |
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| T |
6457230 |
taaacaggtgaagaggttggattctgcccaattgattgacttagaattcacacttggaaggcctaattggggaaaagaccatgctgaatcatcaagagaa |
6457329 |
T |
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| Q |
118 |
ttatctcttcttaagtgttaaattaattaattataaacactaattaattaaactttccttgtcattaatgaatagtgtactactacattactaggaaatt |
217 |
Q |
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| T |
6457330 |
ttatctcttcttaagtgttaaattaattaattataaacactaattaattaaactttccttgtcattaatgaatagtgtactactacattactaggaaatt |
6457429 |
T |
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| Q |
218 |
ttccatgtgaatgatttaatatatctatctaagttttgtatgaaagtgaaatgaggaatattgggataaatatttgctacaaaacatatgcttgagtcca |
317 |
Q |
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| T |
6457430 |
ttccatgtgaatgatttaatatatctatctaagttttgtatgaaagtgaaatgaggaatattgggataaatatttgctacaaaacatatgcttgagtcca |
6457529 |
T |
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| Q |
318 |
aagaatttcaggacattgtctttgatgtcattttcagtgca |
358 |
Q |
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| T |
6457530 |
aagaatttcaggacattgtctttgatgtcattttcagtgca |
6457570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 54 - 234
Target Start/End: Complemental strand, 6595126 - 6594939
Alignment:
| Q |
54 |
tgacttagaattcacacttggaaggcctaattggggaaaagaccatgctgaatcatcaagagaattatctcttcttaagtgttaaattaattaattataa |
153 |
Q |
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| T |
6595126 |
tgacttagtatttacacttggaaggcctaattggggaaaagaccatgttgaatcatcaagagaattagctcatcttaagtgtcaaattaattaattataa |
6595027 |
T |
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| Q |
154 |
acactaattaattaa---------actttccttgtcattaatgaatagtgtactactacattactaggaaattttccatgtgaatgattt |
234 |
Q |
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| T |
6595026 |
acactaattaattaattaaactttaatttccttgtcattaatgaatagt--actgctacattactaggaaattttccatatgaatgattt |
6594939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 227 - 352
Target Start/End: Complemental strand, 6594850 - 6594725
Alignment:
| Q |
227 |
aatgatttaatatatctatctaagttttgtatgaaagtgaaatgaggaatattgggataaatatttgctacaaaacatatgcttgagtccaaagaatttc |
326 |
Q |
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| T |
6594850 |
aatgatttaatatatctatctaagtttggtatgaaagtgaaataaggaatattgggataaatatttgctacaaaacgtatgcttgagtccaaagaatttc |
6594751 |
T |
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| Q |
327 |
aggacattgtctttgatgtcattttc |
352 |
Q |
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||| |||||||||| ||||||||||| |
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| T |
6594750 |
agggcattgtcttttatgtcattttc |
6594725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 295 - 358
Target Start/End: Complemental strand, 6594719 - 6594656
Alignment:
| Q |
295 |
tacaaaacatatgcttgagtccaaagaatttcaggacattgtctttgatgtcattttcagtgca |
358 |
Q |
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|||||||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| |
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| T |
6594719 |
tacaaaacgtatgcttgagtccaaagaatctcagggcattgtcttttatgtcattttcagtgca |
6594656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 6595221 - 6595188
Alignment:
| Q |
18 |
taaacaggtgaagaggttggattctgcccaattg |
51 |
Q |
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| T |
6595221 |
taaacaggtgaagaggttagattctgcccaattg |
6595188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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