View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14473_high_38 (Length: 325)

Name: NF14473_high_38
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14473_high_38
NF14473_high_38
[»] chr2 (3 HSPs)
chr2 (1-200)||(42826565-42826764)
chr2 (261-308)||(42826822-42826869)
chr2 (112-160)||(42832537-42832585)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 42826565 - 42826764
Alignment:
Q  1 aaaaggctacacaaatttacctaaaacttgcaactcatatacaaaacaaactctcaaactctacatgttgaacaatgtactacatctacattgcaaatcc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42826565 aaaaggctacacaaatttacctaaaacttgcaactcatgtacaaaacaaactctcaaactctacatgttgaacaatgtactacatctacattgcaaatcc 42826664  T
Q  101 tgctaaggaaatgtcattgacatgcatacaatcatcaactaagacattttattttatttttcatctnnnnnnncttgcttttccaattattgattttgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||       |||||||||||||||||||||||||||    
T  42826665 tgctaaggaaatgtcattgacatgcatacaatcatcaactaagacatttaattttatttttcagctaaaaaaacttgcttttccaattattgattttgtt 42826764  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 42826822 - 42826869
Alignment:
Q  261 tagtttccatcaaaaagggtcaaagttattacctttaacagggtcaat 308  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||    
T  42826822 tagtttccatcaaaaagggtcaaagttattacctttaataggatcaat 42826869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 42832537 - 42832585
Alignment:
Q  112 tgtcattgacatgcatacaatcatcaactaagacattttattttatttt 160  Q
    ||||||| |||||||| |||||| |||||||||||||| ||||||||||    
T  42832537 tgtcattaacatgcatgcaatcaacaactaagacatttaattttatttt 42832585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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