View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_high_39 (Length: 324)
Name: NF14473_high_39
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_high_39 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 2 - 324
Target Start/End: Complemental strand, 5391290 - 5390967
Alignment:
| Q |
2 |
ggagaagttaggaattgttaacttccgccatagattcaatgccgttgaactacgtcgttgtcgtaaaagtatgttgaaaccaatcatggcgcaggacgag |
101 |
Q |
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| T |
5391290 |
ggagaagttaggaattgttaacttccgccatagattcaatgccgttgaactacgtcgttgtcgtaaaagtatgttgaaaccaatcatggcgcaggacgag |
5391191 |
T |
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| Q |
102 |
cgtgaatcatctattgccgatgacgataacagaattccgaaatacaagggaatttctgtgaataaaaggaactgtgttaaaaatgaacctgattcatctt |
201 |
Q |
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| T |
5391190 |
cgtgaatcatctattgccgatgacgataacagaattccgaaatacaagggaatttctgtgaataaaaggaactgtgttaaaaatgaacctgattcatctt |
5391091 |
T |
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| Q |
202 |
tcattgatcattctgcagcattttctggtactttattt-ttcaattatattgtttttgaataagttttctcaattaccgagttcaattccaatcaaatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391090 |
tcattgatcattctgcagcattttctggtactttatttattcaattatattgtttttgaataagttttctcaattaccgagttcaattccaatcaaatgt |
5390991 |
T |
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| Q |
301 |
gtctgatgaataaggaatattcct |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
5390990 |
gtctgatgaataaggaatattcct |
5390967 |
T |
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