View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_high_45 (Length: 304)
Name: NF14473_high_45
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 15 - 289
Target Start/End: Original strand, 45105715 - 45105989
Alignment:
| Q |
15 |
gaatcaccaataatccacaaaagtgatttgtgttcaaatgaacataacaacacctcaaatgacacaaattctgatcaggattgttgtaaatcatcactcc |
114 |
Q |
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| T |
45105715 |
gaatcaacaataatccacaaaagtgatttgtgttcaaatgaacataacaacacctcaaatgacacaaattctgatcaggattgttgtaaatcatcactgc |
45105814 |
T |
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| Q |
115 |
ctgatgtcaaagcaagagtgttggaaaatgaagtactcattgagatccattgtaagaaggaaaatggcattgagatcaaaatattgaatttgcttgaaaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45105815 |
ctgatgtcaaagcaagagtgttggaaaatgaagtactcattgagatccattgtgagaaggaaaatggcattgagatcaaaatattgaatttgcttgaaaa |
45105914 |
T |
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| Q |
215 |
tcttcatcttattgtcactgccagcagtgtatttccttttgggaattcaactcttggcttcactattgttgctca |
289 |
Q |
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| T |
45105915 |
tcttcatcttattgtcactgccagcagtgtatttccttttgggaattcaactcttggcttcactattgttgctca |
45105989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 79 - 289
Target Start/End: Original strand, 45132066 - 45132276
Alignment:
| Q |
79 |
caaattctgatcaggattgttgtaaatcatcactccctgatgtcaaagcaagagtgttggaaaatgaagtactcattgagatccattgtaagaaggaaaa |
178 |
Q |
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|||| |||||||||||||| || |||||| ||||| |||||| ||||||||| | |||||||||| ||||||||| |||| || ||| |||||||||| |
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| T |
45132066 |
caaactctgatcaggattgctgcaaatcaccactctttgatgttaaagcaagaataatggaaaatgaggtactcattcagatgcactgtgagaaggaaaa |
45132165 |
T |
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| Q |
179 |
tggcattgagatcaaaatattgaatttgcttgaaaatcttcatcttattgtcactgccagcagtgtatttccttttgggaattcaactcttggcttcact |
278 |
Q |
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| T |
45132166 |
tgacattgagatcaaaatatataacgtgctagaaaatcttgatctctttgtcactgctagcagtgtattggcttttgggacttcaactcttggctttact |
45132265 |
T |
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| Q |
279 |
attgttgctca |
289 |
Q |
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| T |
45132266 |
attgtcgctca |
45132276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 45113266 - 45113373
Alignment:
| Q |
114 |
cctgatgtcaaagcaagagtgttggaaaatgaagtactcattgagatccattgtaagaaggaaaatggcattgagatcaaaatattgaatttgcttgaaa |
213 |
Q |
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||||||||||||| | ||||||||| ||| | |||||||| | ||| ||||| ||||||||||||||||| | |||||||||| | ||||| ||| |
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| T |
45113266 |
cctgatgtcaaagtgaaagtgttggagaataatatactcatttacatcaattgtgagaaggaaaatggcattcaacacaaaatattggacatgcttcaaa |
45113365 |
T |
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| Q |
214 |
atcttcat |
221 |
Q |
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|||||||| |
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| T |
45113366 |
atcttcat |
45113373 |
T |
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