View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14473_high_47 (Length: 300)

Name: NF14473_high_47
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14473_high_47
NF14473_high_47
[»] chr7 (1 HSPs)
chr7 (19-300)||(36273353-36273633)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 36273633 - 36273353
Alignment:
Q  19 taaatctctcaccttagcccattgatcatagtcttcattccacatgccatccaagacgagtaggaa-tttttacctttaagtttatcttttacacgattt 117  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36273633 taaatctctcaccttagcccattgatcatagtgttcattccacatgccgtccaagacgagtaggaactttttacctttaagtttatcttttacacgattt 36273534  T
Q  118 tttagttcctcaatatctaaatctctataattttgtctataagcggcagtagcagtatgagttgaatcgttaacagaactgatgattttaattacgagtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36273533 tttagttcctcaatatctaaatctctataattttgtctataagcggcagtagcagcatgagttgaatcgttaacagaactgatgattttaattacgagtt 36273434  T
Q  218 gcctaacgtcaaagctttctgaaacacacacccacatcttggataaaaaatactcatttattctctcattattgaacacaagc 300  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36273433 gcctaacgtcaaagctttctgaaac--acacccacatcttggataaaaaatactcatttattctctcatcattgaacacaagc 36273353  T

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