View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_high_5 (Length: 562)
Name: NF14473_high_5
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 25 - 543
Target Start/End: Original strand, 44542111 - 44542631
Alignment:
| Q |
25 |
ggtgttctctgtttctgtggttgttatgtcatcttgaggttcatcctctgtttctgtggttgttagtccttctcgaggttcatccttctcttcctctccc |
124 |
Q |
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| T |
44542111 |
ggtgttctctgtttctgtggttgttatgtcatcttgaggttcatcctctgtttctgtggttgttaggccttctcgaggttcatccttctcttcctctccc |
44542210 |
T |
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| Q |
125 |
gaagattcttcagcaactgcgttttcatttgatgatgatgcactttctggatgggagtggtcagagaaggcaatttcctgatgatggaagcaagtattac |
224 |
Q |
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| T |
44542211 |
gaagattcttcagcaactgcgttttcatttgatgatgatgcactttctggatgggagtggtcagagaaggcaatttcttgatgatggaagcaagtattac |
44542310 |
T |
|
| Q |
225 |
tgggctcattgtcgattttcccctcctgaaccaaattcaacatccaagttaaaggc----tatatataataaaatatcaaacagctgcatttgaataaac |
320 |
Q |
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| T |
44542311 |
tgggctcattgttgattttcccctcctgaaccaaattcaacatccaagttaaaggctatatatatataataaaatatcaaacatctgcatttgaataaac |
44542410 |
T |
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| Q |
321 |
tataatgaaggatatgaattaccagaatcaatggttgttcagagagcaactcaaaggaactaattgtcttggtgcactcattggatgtcaaacaactgca |
420 |
Q |
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| T |
44542411 |
tataatgaagg--atgaattaccagaatcaatggttgttcagagagcaactcaaaggaactaattgtcttggtgcactcattggatgtcaaacaactgca |
44542508 |
T |
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| Q |
421 |
acaattgacacaagttaacgatgtaatgaaattttatgtaattgaacatgacaaaaggaaggacataattattaataaaagaatgttttaaatcgctgtc |
520 |
Q |
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| T |
44542509 |
acaattgacacaagttaacgatgtaatgaaattttatgtaattgaacatgacaaaaggaaggacataattattaataaaagaatgttttaaatcgctgtc |
44542608 |
T |
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| Q |
521 |
tgcaaccgcaatcacggcgtaaa |
543 |
Q |
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| T |
44542609 |
tgcaaccgcaatcacggcataaa |
44542631 |
T |
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