View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_high_55 (Length: 283)
Name: NF14473_high_55
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_high_55 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 27439692 - 27439942
Alignment:
| Q |
16 |
ataatatcacggttttgatgatttagataggctccaagtccaaactgataaacgaatgctggatgttgatttccccaaccccaccatgctagtgcttttt |
115 |
Q |
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| T |
27439692 |
ataatatcacggttttgatgatttagataggctccaagtccaaactgataaacgaatgctggatgttgatttccccaaccctaccatgctagtgcttttt |
27439791 |
T |
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| Q |
116 |
gcaaattttattattaaaagtgactaaatgcatcaatcctttgaaatatatttatgatataataacttatctatacaaatctgcctagnnnnnnnntgtt |
215 |
Q |
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| T |
27439792 |
gcaaattttattattaaaagtgactaaatgcatcaatcctttgaaatatatttatgatataataacttatc--tactaatctgcctagaaaaaaaatgtt |
27439889 |
T |
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| Q |
216 |
atctacaaatcatgattactccatctgaagtctaaacagtttgtagatgttac |
268 |
Q |
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| T |
27439890 |
atctacaaatcatgattactccatctgaagtctaaacagtttgtagatgttac |
27439942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 27443371 - 27443461
Alignment:
| Q |
73 |
gctggatgttgatttccccaaccccaccatgctagtgctttttgca-aattttattattaaaagtgactaaatgcatcaatcctttgaaat |
162 |
Q |
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| T |
27443371 |
gctggatgttgattcctccaaccccaccatactaatgcttttttcacatttttattgatgaaagtgactaaatgcatcattccttggaaat |
27443461 |
T |
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