View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_high_6 (Length: 543)
Name: NF14473_high_6
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 23 - 530
Target Start/End: Complemental strand, 46357709 - 46357204
Alignment:
| Q |
23 |
atctgtctcactagttgacatgtttatttccatatttaggaatcattatttgtaaatggaaattaaattctgtttggcatcaaatcttttaaactacttc |
122 |
Q |
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| T |
46357709 |
atctgtctcactagttgacatgtttatttccatatttaggaatcattatttgtaaatggaaattaaattctgtttggcatcaaatcttttaaactacttc |
46357610 |
T |
|
| Q |
123 |
tgtgaactcaataaaaaatgtatttaacgatgctcatattcacctatatatctacatcnnnnnnncttcagaaaaataatattcattcaaatgataaaat |
222 |
Q |
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| T |
46357609 |
tgtgaactcaataaaaaatgtatttaacgatgctcatattcacctatatatctacatctttttttcttcagaaaaataatatttattcaaatgataaaat |
46357510 |
T |
|
| Q |
223 |
tttgaatgatcatgtgttgcgacactcccatccacattttaaatcaatattagtaactaataaaagtcaagaataagctaggatacacacaaacagtcca |
322 |
Q |
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| T |
46357509 |
tttgaatgatcatgtgttgcgacactcccatccacattttaaatcaatattagtaactaat-aaagtcaagaataagctaggatacacacaaacagtcca |
46357411 |
T |
|
| Q |
323 |
aaaaccaaggagaaattaacgaatcaaaaccttaatcctaaaaacccaacaaacttctttcaaatacgatcaatgggcaactgctataaaaccatctacc |
422 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46357410 |
aaaaccaaggagaaattaacaaatcaaaaccttaatcctaaaaacccaacaaacttctttcaaatacgatcaatgggcaactgctataaaaccatctacc |
46357311 |
T |
|
| Q |
423 |
tttgnnnnnnntaattgatattcattcatataacgtgaccaatacaactacatgttgagaagtcttttgtgacgccgcagacctcttaccccaagacaag |
522 |
Q |
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||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46357310 |
-ttgaaaaaaaaaattgatattcattcatataacgtgaccaatataactacatgttgagaagtcttttgtgacgccgtagacctcttaccccaagacaaa |
46357212 |
T |
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| Q |
523 |
ttcatctc |
530 |
Q |
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|||||||| |
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| T |
46357211 |
ttcatctc |
46357204 |
T |
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