View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_high_64 (Length: 250)
Name: NF14473_high_64
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_high_64 |
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| [»] scaffold0129 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: scaffold0129 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 30387 - 30323
Alignment:
| Q |
13 |
aatatatcatcattgaagattatgtagcattaaggtgctgccatgaatttgtggtaaaaacctaa |
77 |
Q |
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| T |
30387 |
aatatatcatcatagaagattatgtagcattaaggtgctgccatgaatttgtagtaaaaacctaa |
30323 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 18732027 - 18731971
Alignment:
| Q |
194 |
agcaatatcatatgcatactgccaacttcatttgcattgaaacggtcatgagtagtc |
250 |
Q |
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| T |
18732027 |
agcaagatcatatgcatactgccaacttcatttggattgaaatggtccggagtagtc |
18731971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 7618761 - 7618814
Alignment:
| Q |
194 |
agcaatatcatatgcatactgccaacttcatttgcattgaaacggtcatgagta |
247 |
Q |
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| T |
7618761 |
agcaagatcatatgcatacgaccaacttcattaggattgaaacggtcaggagta |
7618814 |
T |
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