View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14473_high_67 (Length: 245)

Name: NF14473_high_67
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14473_high_67
NF14473_high_67
[»] chr1 (14 HSPs)
chr1 (13-241)||(28238873-28239101)
chr1 (141-245)||(47568944-47569048)
chr1 (117-237)||(28231295-28231415)
chr1 (11-70)||(23787015-23787074)
chr1 (11-70)||(24621793-24621852)
chr1 (13-71)||(28231470-28231528)
chr1 (14-59)||(4251618-4251663)
chr1 (13-56)||(47569148-47569191)
chr1 (13-59)||(671045-671091)
chr1 (194-245)||(6326999-6327050)
chr1 (13-67)||(6326806-6326860)
chr1 (11-49)||(12535530-12535568)
chr1 (13-70)||(21159199-21159259)
chr1 (13-58)||(14508864-14508909)
[»] chr5 (1 HSPs)
chr5 (13-57)||(1717877-1717921)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 28239101 - 28238873
Alignment:
Q  13 cataggcttggtttacaagtctatctttgcagagcctgtatatgattgaattataacactgcaggagagtaaagtcaccttccccatcaatctggagtgc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  28239101 cataggcttggtttacaagtctatctttgcagagcctgtatatgatttaattataacaccgcaggagagtaaagtcaccttcctcatcagtctggagtgc 28239002  T
Q  113 acgcctcaacaactgtattgctgtgtgcgtttctcctatcttacataatccttcaattagaacaagataacacttatggttcaactgaaaacccttttta 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||    
T  28239001 acgcctcaacaactgtattgctgtgtgcgtttctcctatcttacataatcctttgattagaacaagataacacttatggtccaactgaaaacccttttta 28238902  T
Q  213 agtatgatgtaattgtaaaagagcattgc 241  Q
    ||||||||||||||||||||| |||||||    
T  28238901 agtatgatgtaattgtaaaagtgcattgc 28238873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 245
Target Start/End: Complemental strand, 47569048 - 47568944
Alignment:
Q  141 gtttctcctatcttacataatccttcaattagaacaagataacacttatggttcaactgaaaaccctttttaagtatgatgtaattgtaaaagagcattg 240  Q
    ||||||||||||| ||||||||| |  || |||| ||||||||  | |||||||||| ||||||| |||||||||||||||| ||||||||| |||||||    
T  47569048 gtttctcctatctcacataatccattgatcagaataagataactatcatggttcaacagaaaaccgtttttaagtatgatgtcattgtaaaacagcattg 47568949  T
Q  241 ctttg 245  Q
    |||||    
T  47568948 ctttg 47568944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 237
Target Start/End: Complemental strand, 28231415 - 28231295
Alignment:
Q  117 ctcaacaactgtattgctgtgtgcgtttctcctatcttacataatccttcaattagaacaagataacacttatggttcaactgaaaaccctttttaagta 216  Q
    ||||||||||| |||||||| || ||||||||||||| ||||||||| |   |||||| |  |||||  | || ||||||||||||||||||||||||||    
T  28231415 ctcaacaactggattgctgtttgagtttctcctatctcacataatccattgcttagaatataataactttcatcgttcaactgaaaaccctttttaagta 28231316  T
Q  217 tgatgtaattgtaaaagagca 237  Q
    ||||   ||||||||||||||    
T  28231315 tgataccattgtaaaagagca 28231295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 23787074 - 23787015
Alignment:
Q  11 agcataggcttggtttacaagtctatctttgcagagcctgtatatgattgaattataaca 70  Q
    |||||||||||||||||||||||| |||||| |||||||| |||||||||| ||||||||    
T  23787074 agcataggcttggtttacaagtctttctttggagagcctgaatatgattgagttataaca 23787015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 24621793 - 24621852
Alignment:
Q  11 agcataggcttggtttacaagtctatctttgcagagcctgtatatgattgaattataaca 70  Q
    |||||||||||||||||||||||| |||||| |||||||| |||||||||| ||||||||    
T  24621793 agcataggcttggtttacaagtctttctttggagagcctgaatatgattgagttataaca 24621852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 28231528 - 28231470
Alignment:
Q  13 cataggcttggtttacaagtctatctttgcagagcctgtatatgattgaattataacac 71  Q
    ||||||||||||| |||||||||||||||||||| ||| |||| |||||||||||||||    
T  28231528 cataggcttggttaacaagtctatctttgcagagtctgaatataattgaattataacac 28231470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 4251618 - 4251663
Alignment:
Q  14 ataggcttggtttacaagtctatctttgcagagcctgtatatgatt 59  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  4251618 ataggcttggtttacaagtctatctttgcagagcctggatatgatt 4251663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 47569191 - 47569148
Alignment:
Q  13 cataggcttggtttacaagtctatctttgcagagcctgtatatg 56  Q
    |||||||||||||||||||||||||||||||||| ||| |||||    
T  47569191 cataggcttggtttacaagtctatctttgcagagtctgaatatg 47569148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 671045 - 671091
Alignment:
Q  13 cataggcttggtttacaagtctatctttgcagagcctgtatatgatt 59  Q
    ||||| ||||||||||||||||||||||||| |||||| ||||||||    
T  671045 catagccttggtttacaagtctatctttgcacagcctgaatatgatt 671091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 6326999 - 6327050
Alignment:
Q  194 caactgaaaaccctttttaagtatgatgtaattgtaaaagagcattgctttg 245  Q
    |||||||||||||| |||||||| ||||| ||| |||||||| |||||||||    
T  6326999 caactgaaaaccctgtttaagtacgatgtcattataaaagaggattgctttg 6327050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 6326806 - 6326860
Alignment:
Q  13 cataggcttggtttacaagtctatctttgcagagcctgtatatgattgaattata 67  Q
    |||||||||||||| ||||||||||||||||||| |||  |||||| || |||||    
T  6326806 cataggcttggtttgcaagtctatctttgcagagtctgagtatgatcgagttata 6326860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 12535530 - 12535568
Alignment:
Q  11 agcataggcttggtttacaagtctatctttgcagagcct 49  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  12535530 agcataggcttcgtttacaagtctatcttcgcagagcct 12535568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 21159199 - 21159259
Alignment:
Q  13 cataggcttggtttacaagtctatctttgcag---agcctgtatatgattgaattataaca 70  Q
    ||||||||||||||| ||||||||||||||||   |||||| |||||| || |||||||||    
T  21159199 cataggcttggtttataagtctatctttgcaggctagcctgaatatgactgtattataaca 21159259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 14508864 - 14508909
Alignment:
Q  13 cataggcttggtttacaagtctatctttgcagagcctgtatatgat 58  Q
    ||||||||||||||||| ||||||||||||| || ||| |||||||    
T  14508864 cataggcttggtttacacgtctatctttgcatagtctgaatatgat 14508909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 1717921 - 1717877
Alignment:
Q  13 cataggcttggtttacaagtctatctttgcagagcctgtatatga 57  Q
    ||||||||||||||||||||||||||||||| || ||| ||||||    
T  1717921 cataggcttggtttacaagtctatctttgcatagtctgaatatga 1717877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University