View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14473_high_76 (Length: 219)
Name: NF14473_high_76
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_high_76 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 31495556 - 31495361
Alignment:
| Q |
16 |
gttatataccttctttgtgtattttatgcgtataaccaataatatatgtgatattttcaatgtagaaaaaactgttcaagctaaactagttgatttgaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31495556 |
gttatataccttctttgtgtattttatgcgtataaccaataatatatgtgatattttcaatgtagaaaaaactgttcaagctaaactagttgatttgaaa |
31495457 |
T |
|
| Q |
116 |
aatactgctgaatatcaatctcttcacactgtttttacccttgttcctgattatcctgtcatggtgaaaacaaacgaaacactccaagaacatccc |
211 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31495456 |
aatactgccgaatatcaatctcttcacactgtttttacccttgttcctgattatcctgtcatggtgaaaacaaacgaaaaactccaagaacatccc |
31495361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University