View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_high_9 (Length: 496)
Name: NF14473_high_9
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Original strand, 45274058 - 45274525
Alignment:
| Q |
17 |
accagagacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45274058 |
accagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatct |
45274157 |
T |
|
| Q |
117 |
cctacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccctattgcggtgttggctgcac |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274158 |
cctacgtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccctattgcggtgttggctgcac |
45274257 |
T |
|
| Q |
217 |
gcatggataatcaattaattagtaatttcaatcacactggctatctatgtcaatgttatatgtatatatttctcttttcaatgtgagttatgttttcttc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45274258 |
gcatggataatcaattaattagtaatttcgatcacactggctatatatgtcaatgttatatgtatatatttctcttttcaatgcgagttatgttttcttc |
45274357 |
T |
|
| Q |
317 |
aaaaataaattttgagagtgatgctactttttcttatatactctttcttcaatcataaggtacacaattaatcaaataaaatnnnnnnngctttgataga |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
45274358 |
aaaaataaattttgagagtgatgctactttttcttatatactctttcttcaatcataaggtatacaattaatcaaataaaataaaaaaagctttgataga |
45274457 |
T |
|
| Q |
417 |
taataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttct |
484 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274458 |
taataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttct |
45274525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 3 - 484
Target Start/End: Original strand, 45282287 - 45282766
Alignment:
| Q |
3 |
atgaggtcaacggcaccagagacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccacca |
102 |
Q |
| |
|
|||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
45282287 |
atgaagtcaacggtacccgagacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccacca |
45282386 |
T |
|
| Q |
103 |
aagcagacatatctcctacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccctattgc |
202 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45282387 |
aagcagacatatctccttggtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgc |
45282486 |
T |
|
| Q |
203 |
ggtgttggctgcacgcatggataatcaattaattagtaatttcaatcacactggctatctatgtcaatgttatatgtatatatttctcttttcaatgtga |
302 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| ||| | | |||||||||||| | |
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| T |
45282487 |
ggtgttggctgcattcatggataatcaattaattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgtta |
45282586 |
T |
|
| Q |
303 |
gttatgttttcttcaaaaataaattttgagagtgatgctactttttcttatatactctttcttcaatcataaggtacacaattaatcaaataaaatnnnn |
402 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||| | ||||||| ||||||||| |
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| T |
45282587 |
gttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactctttcttcattcataa-gtaaataattaattaaataaaat-aaa |
45282684 |
T |
|
| Q |
403 |
nnngctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttct |
484 |
Q |
| |
|
| |||||| ||| |||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||||||| |
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|
| T |
45282685 |
aaagttttgatcgatgataattgaattaagtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctttct |
45282766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 398
Target Start/End: Original strand, 45270517 - 45270910
Alignment:
| Q |
3 |
atgaggtcaacggcaccagagacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccacca |
102 |
Q |
| |
|
|||| ||||| || ||| |||| || ||| ||||||||| | || |||||| ||||||| ||||| ||||||||||||| | ||||||||||||||||| |
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|
| T |
45270517 |
atgaagtcaatggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccacca |
45270616 |
T |
|
| Q |
103 |
aagcagacatatctcctacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccctattgc |
202 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
45270617 |
aagcagacatatctcctatgtttctaaatgccacagcttgcataccggcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgc |
45270716 |
T |
|
| Q |
203 |
ggtgttggctgcacgcatggataatcaattaattagtaatttcaatcacactggctatctatgtcaatgttatatgtatatatttctcttttcaatgtga |
302 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||| ||| || |||| |||||| ||| | ||| | | ||||||| | |||||||||||||| |
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|
| T |
45270717 |
ggtgttggctgcatgcatggatgatcaattaattagtaacttctataacaccggctatatatatgtatg---tgtctatatatatatcttttcaatgtga |
45270813 |
T |
|
| Q |
303 |
gtt-atgttttcttcaaaaataaattttgagagtgatgctactttttcttatatactctttcttcaatcataaggtacacaattaatcaaataaaat |
398 |
Q |
| |
|
||| ||||||| ||||||||| ||||||||||||||||||||| |||| || |||||| |||||| |||||||||||||||||||| ||||||||| |
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|
| T |
45270814 |
gttaatgtttttttcaaaaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaattaattaaataaaat |
45270910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 45293633 - 45293884
Alignment:
| Q |
9 |
tcaacggcaccagagacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcag |
108 |
Q |
| |
|
||||||| |||||||| || ||||||||||||| | || |||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45293633 |
tcaacggtaccagagataacacaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcag |
45293732 |
T |
|
| Q |
109 |
acatatctcctacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccctattgcggtgtt |
208 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
45293733 |
acatatctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgtt |
45293832 |
T |
|
| Q |
209 |
ggctgcacgcatggataatcaattaattagtaatttcaatcacactggctat |
260 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| ||| ||||||| |||||| |
|
|
| T |
45293833 |
ggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctat |
45293884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 45302593 - 45302844
Alignment:
| Q |
9 |
tcaacggcaccagagacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcag |
108 |
Q |
| |
|
||||||| |||||||| || ||||||||||||| | || |||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45302593 |
tcaacggtaccagagataacacaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcag |
45302692 |
T |
|
| Q |
109 |
acatatctcctacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccctattgcggtgtt |
208 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
45302693 |
acatatctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgtt |
45302792 |
T |
|
| Q |
209 |
ggctgcacgcatggataatcaattaattagtaatttcaatcacactggctat |
260 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| ||| ||||||| |||||| |
|
|
| T |
45302793 |
ggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctat |
45302844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 289 - 484
Target Start/End: Original strand, 45293958 - 45294154
Alignment:
| Q |
289 |
tcttttcaatgtgagttatgttttcttcaaaaataaattttgagagtgatgctactttttcttat--atactctttcttcaatcataaggtacacaatta |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||| || ||| ||||||||| ||||||||||||||||| |
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|
| T |
45293958 |
tcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaattt |
45294057 |
T |
|
| Q |
387 |
atcaaataaaatnnnnnnngctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttct |
484 |
Q |
| |
|
|| ||||||||| | | |||| ||| ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||||||| |
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|
| T |
45294058 |
attaaataaaat-aaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttct |
45294154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 289 - 484
Target Start/End: Original strand, 45302918 - 45303114
Alignment:
| Q |
289 |
tcttttcaatgtgagttatgttttcttcaaaaataaattttgagagtgatgctactttttcttat--atactctttcttcaatcataaggtacacaatta |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||| || ||| ||||||||| ||||||||||||||||| |
|
|
| T |
45302918 |
tcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaattt |
45303017 |
T |
|
| Q |
387 |
atcaaataaaatnnnnnnngctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttct |
484 |
Q |
| |
|
|| ||||||||| | | |||| ||| ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||||||| |
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|
| T |
45303018 |
attaaataaaat-aaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttct |
45303114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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