View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_low_11 (Length: 484)
Name: NF14473_low_11
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 48964191 - 48964657
Alignment:
| Q |
1 |
tcaaaaagatatactcgttattaccatcacacaattgagcaaatagcaaattgaagatattttgtacatctcataaatcaaactttctaaatggctgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48964191 |
tcaaaaagatatactcgttattaccatcacacaattgagcaaatagcaaattgaagatattttgtacatctcataaatcaaactttctaaatggctgcaa |
48964290 |
T |
|
| Q |
101 |
ttgccttcaatattttcccttcaatttcaaaacactgaataaataattcaaagctttgtgttgtatatatatgatccccaaatggatgaatgattttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48964291 |
ttgccttcaatattttcccttcaatttcaaaacactgaataaataattcaaagctttgtgttgtatatatatgatccccaaatggatgaatgattttgtt |
48964390 |
T |
|
| Q |
201 |
ttaccttagatatatgagttagattccctttcttatagaatggaataattctatcatgtcattctaactcactgctgaacttttctcttaggactcacaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||| |
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| T |
48964391 |
ttaccttagatatatgagttagattccctttcttatagaatggaataattctatcatgtcattctaattcactgctgaacttttctgttaggattcacaa |
48964490 |
T |
|
| Q |
301 |
actttttaggaatagttttatctgttaattattttgaaatgatatatgtatctcaaggaagaaaaaataaagacaagaaagatactccacttatggaaca |
400 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48964491 |
actttttaggaatagtaatatctgtcaattattttgaaatgctatatgtatctcaaggaagaaaaaataaagacaagaaagatactccacttatggaaca |
48964590 |
T |
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| Q |
401 |
tactactttcccttcttagtattctctttcagtaacatgttcaccattctttgcatacaatatatag |
467 |
Q |
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| T |
48964591 |
tactactttcccttcttagtattctctttcagtaacatgttcaccattctttgcatacaatatatag |
48964657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 48959850 - 48959961
Alignment:
| Q |
40 |
caaatagcaaattgaagatattttgtacatctcataaatcaaactttctaaatggctgcaattgccttcaatattttcccttcaatttcaaaacactgaa |
139 |
Q |
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|||||||||||||||||| || |||||||||| | ||||||||||||| | | || ||||||||||| | ||| | ||||||||||||||||||||| |
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| T |
48959850 |
caaatagcaaattgaagacatattgtacatcttaaaaatcaaactttcctgctagttgtaattgccttcattttttcctcttcaatttcaaaacactgaa |
48959949 |
T |
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| Q |
140 |
taaataattcaa |
151 |
Q |
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||| ||||||| |
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| T |
48959950 |
aaaaaaattcaa |
48959961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 361
Target Start/End: Original strand, 48960039 - 48960148
Alignment:
| Q |
256 |
atgtcattctaactcactgctgaacttttctcttaggactcacaaactttttaggaatagttttatctgttaattattttgaaatg----atatatgtat |
351 |
Q |
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||||||||||||||||| |||| |||||||| || ||||||| || || |||||| |||| |||| ||||||||||||||||| |||||||||| |
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| T |
48960039 |
atgtcattctaactcacagctgtacttttctgtttggactcataagtttgttaggattagtaagatctcttaattattttgaaatgctgtatatatgtat |
48960138 |
T |
|
| Q |
352 |
ctcaaggaag |
361 |
Q |
| |
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|||| ||||| |
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| T |
48960139 |
ctcatggaag |
48960148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 48959982 - 48960014
Alignment:
| Q |
180 |
aaatggatgaatgattttgttttaccttagata |
212 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
48959982 |
aaatggatgaataattttgttttaccttagata |
48960014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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