View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14473_low_12 (Length: 479)
Name: NF14473_low_12
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_low_12 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 27495014 - 27495474
Alignment:
| Q |
1 |
tcaaatcttataataaaacaaaaattacatgtgcataaatgaatacatgtacatatgatatatcattgatcatcaagcaaataatgcgccaaatagttac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27495014 |
tcaaatcttataataaaacaaaaattacatgtgcgtaaatgaatacatgtacatatgatatatcactgatcatcaagcaaataatgcgccaaatagttac |
27495113 |
T |
|
| Q |
101 |
atctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgttacaaaacaaggtcggatcaaattcgttgatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27495114 |
atctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgttacaaaacaaggtcggatcaaattcgttgatttt |
27495213 |
T |
|
| Q |
201 |
ggtgcagcaacagatcttaggattttcgtcaacctgaactgtatcttctaccgcaagaaacaccaaatcttcctccatagccaattgcagcttgactcac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27495214 |
ggtgcagcaacagatcttaggattttcgtcaacctgaactgtatcttctaccgcaagaaacaccaaatcttcctccatagccaattgcagcttgactcac |
27495313 |
T |
|
| Q |
301 |
caatattgtggcaggtctgacatcttttatcctatttaaatatgtagtcaaattaatataaaattggcttctaacaannnnnnnatattagtaaaagaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27495314 |
caatattgtggcaggtctgacatcttttatcctatttaaatatgtattcaaattaatataaaattggcttctaacaa-ttttttatattagtaaaagaag |
27495412 |
T |
|
| Q |
401 |
tatataggccaacatattgatagaatcacacgcaactttgaagtacacatacattaataagt |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27495413 |
tatataggccaacatattgatagaatcacacgcaactttgaagtacacatacattaataagt |
27495474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 27501672 - 27502132
Alignment:
| Q |
1 |
tcaaatcttataataaaacaaaaattacatgtgcataaatgaatacatgtacatatgatatatcattgatcatcaagcaaataatgcgccaaatagttac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27501672 |
tcaaatcttataataaaacaaaaattacatgtgcgtaaatgaatacatgtacatatgatatatcactgatcatcaagcaaataatgcgccaaatagttac |
27501771 |
T |
|
| Q |
101 |
atctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgttacaaaacaaggtcggatcaaattcgttgatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27501772 |
atctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgttacaaaacaaggtcggatcaaattcgttgatttt |
27501871 |
T |
|
| Q |
201 |
ggtgcagcaacagatcttaggattttcgtcaacctgaactgtatcttctaccgcaagaaacaccaaatcttcctccatagccaattgcagcttgactcac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27501872 |
ggtgcagcaacagatcttaggattttcgtcaacctgaactgtatcttctaccgcaagaaacaccaaatcttcctccatagccaattgcagcttgactcac |
27501971 |
T |
|
| Q |
301 |
caatattgtggcaggtctgacatcttttatcctatttaaatatgtagtcaaattaatataaaattggcttctaacaannnnnnnatattagtaaaagaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
27501972 |
caatattgtggcaggtctgacatcttttatcctatttaaatatgtattcaaattaatataaaattggcttctaacaa-ttttttatattagtaaaagaag |
27502070 |
T |
|
| Q |
401 |
tatataggccaacatattgatagaatcacacgcaactttgaagtacacatacattaataagt |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27502071 |
tatataggccaacatattgatagaatcacacgcaactttgaagtacacatacattaataagt |
27502132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 27516464 - 27516924
Alignment:
| Q |
1 |
tcaaatcttataataaaacaaaaattacatgtgcataaatgaatacatgtacatatgatatatcattgatcatcaagcaaataatgcgccaaatagttac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27516464 |
tcaaatcttataataaaacaaaaattacatgtgcgtaaatgaatacatgtacatatgatatatcactgatcatcaagcaaataatgcgccaaatagttac |
27516563 |
T |
|
| Q |
101 |
atctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgttacaaaacaaggtcggatcaaattcgttgatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27516564 |
atctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgttacaaaacaaggtcggatcaaattcgttgatttt |
27516663 |
T |
|
| Q |
201 |
ggtgcagcaacagatcttaggattttcgtcaacctgaactgtatcttctaccgcaagaaacaccaaatcttcctccatagccaattgcagcttgactcac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27516664 |
ggtgcagcaacagatcttaggattttcgtcaacctgaactgtatcttctaccgcaagaaacaccaaatcttcctccatagccaattgcagcttgactcac |
27516763 |
T |
|
| Q |
301 |
caatattgtggcaggtctgacatcttttatcctatttaaatatgtagtcaaattaatataaaattggcttctaacaannnnnnnatattagtaaaagaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27516764 |
caatattgtggcaggtctgacatcttttatcctatttaaatatgtattcaaattaatataaaattggcttctaacaa-ttttttatattagtaaaagaag |
27516862 |
T |
|
| Q |
401 |
tatataggccaacatattgatagaatcacacgcaactttgaagtacacatacattaataagt |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27516863 |
tatataggccaacatattgatagaatcacacgcaactttgaagtacacatacattaataagt |
27516924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 77 - 462
Target Start/End: Original strand, 27507565 - 27507950
Alignment:
| Q |
77 |
gcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgttacaaaacaa |
176 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27507565 |
gcaaataatgcgccagataattacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgttacaaaacta |
27507664 |
T |
|
| Q |
177 |
ggtcggatcaaattcgttgattttggtgcagcaacagatcttaggattttcgtcaacctgaactgtatcttctaccgcaagaaacaccaaatcttcctcc |
276 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
27507665 |
ggtcggattaaattcgttgattttggtgcagcaacagatcttaggattttgttccccctgaactgtatcttctaccacaagaaacaccaagtcttcctcc |
27507764 |
T |
|
| Q |
277 |
atagccaattgcagcttgac--tcaccaatattgtggcaggtctgacatcttttatcctatttaaatatgtagtcaaattaatataaaattggcttctaa |
374 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
27507765 |
atagccaattgcagctttactttcacc-atattgtggcaggtctgacttcttttatcctatttaaatatgtagtcaaattaacataacattggcttctaa |
27507863 |
T |
|
| Q |
375 |
caannnnnnnatattagtaaaagaagtatataggccaacatattgatagaatcacacgcaactttgaagtacacatacattaataagt |
462 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27507864 |
caa-ttttttatattagtaaaagaagtatataggccaacatattgataaaatcacacgcaactttgaagtatacatacattaataagt |
27507950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 27492372 - 27492528
Alignment:
| Q |
64 |
cattgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggt |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| |||||||||| |||||||| |
|
|
| T |
27492372 |
cattgatcatcaagcaaataatgcgccaaatcattacatctcttaagaaaattcacgacactggcatcgttcacagggatgtaaagccttccaacttggt |
27492471 |
T |
|
| Q |
164 |
tgttacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacagatcttag |
220 |
Q |
| |
|
|||||||||| |||| | ||| ||| || |||||||||||||||||||||| ||||| |
|
|
| T |
27492472 |
tgttacaaaaaaagggcagattaaactcattgattttggtgcagcaacagaccttag |
27492528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 233 - 338
Target Start/End: Original strand, 27492584 - 27492691
Alignment:
| Q |
233 |
cctgaactgtatcttctaccgcaagaaacaccaaatcttcctccatagccaattgcagcttga--ctcaccaatattgtggcaggtctgacatcttttat |
330 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||| || |||||||||| | ||||||||||||| | ||||||||| ||||||||||| | | ||| |||| |
|
|
| T |
27492584 |
cctgaactatatgttctaccacaagaaacacaaagtcttcctccagaaccaattgcagctttaatctcaccaatcttgtggcaggttttatttctgttat |
27492683 |
T |
|
| Q |
331 |
cctattta |
338 |
Q |
| |
|
|||||||| |
|
|
| T |
27492684 |
cctattta |
27492691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 27492881 - 27492913
Alignment:
| Q |
396 |
agaagtatataggccaacatattgatagaatca |
428 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
27492881 |
agaagtatataggccaagatattgatagaatca |
27492913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 293675 - 293516
Alignment:
| Q |
64 |
cattgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggt |
163 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| |||| |||||||||||||||||||| || |||| |||||| || ||||||||||| | ||||| || |
|
|
| T |
293675 |
cattgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaacttagt |
293576 |
T |
|
| Q |
164 |
tgttacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacagatcttaggat |
223 |
Q |
| |
|
|| || ||||| || | ||| ||| || ||||||||||||| |||||||| ||| |||| |
|
|
| T |
293575 |
ggtcaccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggat |
293516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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