View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14473_low_14 (Length: 474)

Name: NF14473_low_14
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14473_low_14
NF14473_low_14
[»] chr3 (1 HSPs)
chr3 (13-458)||(9213706-9214151)
[»] chr4 (9 HSPs)
chr4 (13-254)||(25159998-25160239)
chr4 (13-256)||(25180225-25180468)
chr4 (13-256)||(25168557-25168800)
chr4 (13-256)||(25252466-25252709)
chr4 (18-89)||(24986310-24986381)
chr4 (18-89)||(25000782-25000853)
chr4 (18-89)||(25046713-25046784)
chr4 (18-86)||(25189340-25189408)
chr4 (201-259)||(25046543-25046601)
[»] chr2 (3 HSPs)
chr2 (123-265)||(42156542-42156684)
chr2 (124-259)||(42167035-42167170)
chr2 (13-84)||(42167210-42167281)


Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 13 - 458
Target Start/End: Original strand, 9213706 - 9214151
Alignment:
Q  13 aagaatatgctgaactttgctttaaggagtttggtgatagggtgaaatattgggttactttgaatgaaccatggagttacagtcaaaatggctatgcaaa 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9213706 aagactatgctgaactttgctttaaggagtttggtgatagggtgaaatattgggttactttgaatgaaccatggagttacagtcaaaatggctatgcaaa 9213805  T
Q  113 tggacgaatggcaccaggtcgttgttctagttggttgaatccaaattgcaccggtggtgattctgcgattgagccctatatagtcacacactaccaactt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9213806 tggacgaatggcaccaggtcgttgttctagttggttgaatccaaattgcaccggtggtgattctgcgattgagccctatatagtcacacactaccaactt 9213905  T
Q  213 ctagctcatgccgaagctgtaaatgtgtacaagacaaagtatcaggtatgttactttgttgagaatcttatagctcaaacaattgttatacttttgccat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9213906 ctagctcatgccgaagctgtaaatgtgtacaagacaaagtatcaggtatgttactttgttgagaatcttatagctcaaacaattgttatacttttgccat 9214005  T
Q  313 ataaagtatcaacgagtagatgatttatcgataacggtttctttatatttctatttaaagatattaaacggtaacgaataactaaagtatttatatgtta 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9214006 ataaagtatcaacgagtagatgatttatcgataacggtttctttatatttctatttaaagatattaaacggtaacgaataactaaagtatttatatgtta 9214105  T
Q  413 catgtgcaggaaactcaaaatggtgtaataggaataaccttggtag 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  9214106 catgtgcaggaaactcaaaatggtgtaataggaataaccttggtag 9214151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 25160239 - 25159998
Alignment:
Q  13 aagaatatgctgaactttgctttaaggagtttggtgatagggtgaaatattgggttactttgaatgaaccatggagttacagtcaaaatggctatgcaaa 112  Q
    |||| ||||| |||||||| || ||||| ||||||||||| || || ||||||||||||||||| || |||||||| || || |||||||||||||||||    
T  25160239 aagactatgcggaactttgtttcaaggaatttggtgatagagtcaagtattgggttactttgaacgagccatggagctatagccaaaatggctatgcaaa 25160140  T
Q  113 tggacgaatggcaccaggtcgttgttctagttggttgaatccaaattgcaccggtggtgattctgcgattgagccctatatagtcacacactaccaactt 212  Q
    ||| ||||||||||| |||||||| || |||||||||||||||||||| || || |||||||||||||| ||||||||| | || ||||| |||||||||    
T  25160139 tgggcgaatggcaccgggtcgttgctccagttggttgaatccaaattgtactggcggtgattctgcgatcgagccctatttggtaacacattaccaactt 25160040  T
Q  213 ctagctcatgccgaagctgtaaatgtgtacaagacaaagtat 254  Q
    || || ||||||| ||| ||  |||||||||||| |||||||    
T  25160039 cttgcacatgccgcagccgttgatgtgtacaagaaaaagtat 25159998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 13 - 256
Target Start/End: Complemental strand, 25180468 - 25180225
Alignment:
Q  13 aagaatatgctgaactttgctttaaggagtttggtgatagggtgaaatattgggttactttgaatgaaccatggagttacagtcaaaatggctatgcaaa 112  Q
    |||| ||||| ||||||||||||||    ||||| ||||| || ||| ||||| | ||||||||||| ||||||||||||||||||||||| ||||||||    
T  25180468 aagactatgcggaactttgctttaaaacatttggagatagagtaaaacattggataactttgaatgagccatggagttacagtcaaaatggatatgcaaa 25180369  T
Q  113 tggacgaatggcaccaggtcgttgttctagttggttgaatccaaattgcaccggtggtgattctgcgattgagccctatatagtcacacactaccaactt 212  Q
    |||   ||||||||||||||| ||||||  |||||| |||||||||||||||||||| |||||||  |  || || ||| ||||  |||| || ||||||    
T  25180368 tggcgcaatggcaccaggtcgatgttcttcttggtttaatccaaattgcaccggtggagattctggaaccgaaccttatttagttgcacattatcaactt 25180269  T
Q  213 ctagctcatgccgaagctgtaaatgtgtacaagacaaagtatca 256  Q
    ||||||||||| | |||||| |||||||||||||| || |||||    
T  25180268 ctagctcatgcagcagctgttaatgtgtacaagactaaatatca 25180225  T

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Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 256
Target Start/End: Complemental strand, 25168800 - 25168557
Alignment:
Q  13 aagaatatgctgaactttgctttaaggagtttggtgatagggtgaaatattgggttactttgaatgaaccatggagttacagtcaaaatggctatgcaaa 112  Q
    |||| ||||| ||||||||||| ||    ||||| ||||| || ||| ||||| | ||||||||||||||||||| |||||||||| |||| ||||||||    
T  25168800 aagactatgcggaactttgcttcaaaacatttggagatagagtaaaacattggataactttgaatgaaccatggacttacagtcaagatgggtatgcaaa 25168701  T
Q  113 tggacgaatggcaccaggtcgttgttctagttggttgaatccaaattgcaccggtggtgattctgcgattgagccctatatagtcacacactaccaactt 212  Q
    |||   ||||||||| ||||| || |||  |||||||||||||||||||||||| ||||||||||  | ||| || ||| ||||  |||| || ||||||    
T  25168700 tggtgaaatggcacctggtcgatgctcttcttggttgaatccaaattgcaccggcggtgattctggaactgaaccttatttagttgcacattatcaactt 25168601  T
Q  213 ctagctcatgccgaagctgtaaatgtgtacaagacaaagtatca 256  Q
    ||||||||||| | || ||| ||| |||||||||| ||||||||    
T  25168600 ctagctcatgcagcagttgttaatttgtacaagaccaagtatca 25168557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 25252466 - 25252709
Alignment:
Q  13 aagaatatgctgaactttgctttaaggagtttggtgatagggtgaaatattgggttactttgaatgaaccatggagttacagtcaaaatggctatgcaaa 112  Q
    |||| ||||| ||||||||||| ||    ||||| ||||| || ||| ||||| | ||||||||||||||||||| |||||||||| |||| ||||||||    
T  25252466 aagactatgcggaactttgcttcaaaacatttggagatagagtaaaacattggataactttgaatgaaccatggacttacagtcaagatgggtatgcaaa 25252565  T
Q  113 tggacgaatggcaccaggtcgttgttctagttggttgaatccaaattgcaccggtggtgattctgcgattgagccctatatagtcacacactaccaactt 212  Q
    |||   |||||||||||| || || |||  |||||||||||||||||||||||| ||||||||||  |  || || ||| ||||  |||| || ||||||    
T  25252566 tggtgaaatggcaccaggacgatgctcttcttggttgaatccaaattgcaccggcggtgattctggaacagaaccttatttagttgcacattatcaactt 25252665  T
Q  213 ctagctcatgccgaagctgtaaatgtgtacaagacaaagtatca 256  Q
    ||||||||||| | || ||| ||| |||||||||| ||||||||    
T  25252666 ctagctcatgcagcagttgttaatttgtacaagaccaagtatca 25252709  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 24986381 - 24986310
Alignment:
Q  18 tatgctgaactttgctttaaggagtttggtgatagggtgaaatattgggttactttgaatgaaccatggagt 89  Q
    ||||||||||||||||  ||||| |||||||||||||||||| ||||| |||||||||||||||||||||||    
T  24986381 tatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatgaaccatggagt 24986310  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 25000782 - 25000853
Alignment:
Q  18 tatgctgaactttgctttaaggagtttggtgatagggtgaaatattgggttactttgaatgaaccatggagt 89  Q
    ||||||||||||||||| ||||| ||||| |||||||||||| ||||| |||||||||||||||||||||||    
T  25000782 tatgctgaactttgcttcaaggaatttggcgatagggtgaaacattggattactttgaatgaaccatggagt 25000853  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 25046784 - 25046713
Alignment:
Q  18 tatgctgaactttgctttaaggagtttggtgatagggtgaaatattgggttactttgaatgaaccatggagt 89  Q
    |||||||| |||||||| ||||| ||||||||||||||||||  ||||  |||||||||||||||| |||||    
T  25046784 tatgctgatctttgcttcaaggaatttggtgatagggtgaaacgttggactactttgaatgaaccaaggagt 25046713  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 25189408 - 25189340
Alignment:
Q  18 tatgctgaactttgctttaaggagtttggtgatagggtgaaatattgggttactttgaatgaaccatgg 86  Q
    |||||||| |||||||| ||||| ||||| ||||| ||||| || ||||||||||| || |||||||||    
T  25189408 tatgctgatctttgcttcaaggaatttggagatagagtgaagtactgggttacttttaacgaaccatgg 25189340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 25046601 - 25046543
Alignment:
Q  201 cactaccaacttctagctcatgccgaagctgtaaatgtgtacaagacaaagtatcaggt 259  Q
    |||||||||||||| |||||| | | |||||||||  |||||||||| |||||||||||    
T  25046601 cactaccaacttcttgctcattctgcagctgtaaaattgtacaagaccaagtatcaggt 25046543  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 123 - 265
Target Start/End: Complemental strand, 42156684 - 42156542
Alignment:
Q  123 gcaccaggtcgttgttctagttggttgaatccaaattgcaccggtggtgattctgcgattgagccctatatagtcacacactaccaacttctagctcatg 222  Q
    ||||| ||||| |||||||  ||||| | | |||||||||||||||||||||| | ||  ||||| || |||||  | ||  |||||||||| |||||||    
T  42156684 gcacctggtcgatgttctaaatggtttagttcaaattgcaccggtggtgattcagggaaagagccttacatagtttcgcatcaccaacttctcgctcatg 42156585  T
Q  223 ccgaagctgtaaatgtgtacaagacaaagtatcaggtatgtta 265  Q
    ||| || |||  ||||||||||||  ||||||||||| |||||    
T  42156584 ccgcagttgtccatgtgtacaagaagaagtatcaggtttgtta 42156542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 259
Target Start/End: Complemental strand, 42167170 - 42167035
Alignment:
Q  124 caccaggtcgttgttctagttggttgaatccaaattgcaccggtggtgattctgcgattgagccctatatagtcacacactaccaacttctagctcatgc 223  Q
    |||| ||||| |||||||  ||||||| | |||||||||||| ||||||||| | ||  || || || || ||  | ||  |||||||||| ||||||||    
T  42167170 cacctggtcgatgttctaaatggttgagttcaaattgcaccgatggtgattcagggaaagaaccttacattgtttcgcatcaccaacttcttgctcatgc 42167071  T
Q  224 cgaagctgtaaatgtgtacaagacaaagtatcaggt 259  Q
    || ||||||  ||||||||||||  |||||||||||    
T  42167070 cgcagctgtcgatgtgtacaagaagaagtatcaggt 42167035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 42167281 - 42167210
Alignment:
Q  13 aagaatatgctgaactttgctttaaggagtttggtgatagggtgaaatattgggttactttgaatgaaccat 84  Q
    |||| ||||| |||||||| || || |||||||| ||||||||||| |||||| ||||||| ||||| ||||    
T  42167281 aagactatgcggaactttgtttcaaagagtttggagatagggtgaagtattggattactttcaatgagccat 42167210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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