View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14473_low_16 (Length: 467)

Name: NF14473_low_16
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14473_low_16
NF14473_low_16
[»] chr4 (4 HSPs)
chr4 (17-284)||(47297864-47298127)
chr4 (374-458)||(47298234-47298318)
chr4 (315-353)||(47298176-47298214)
chr4 (148-204)||(30472950-30473007)
[»] chr3 (2 HSPs)
chr3 (144-191)||(54173323-54173370)
chr3 (170-229)||(25359608-25359667)
[»] chr1 (5 HSPs)
chr1 (85-136)||(26382780-26382831)
chr1 (141-199)||(1514364-1514423)
chr1 (141-191)||(47553968-47554018)
chr1 (164-204)||(6590004-6590045)
chr1 (144-199)||(30850407-30850463)
[»] chr6 (3 HSPs)
chr6 (144-191)||(17225882-17225929)
chr6 (148-199)||(19601457-19601509)
chr6 (144-203)||(26280622-26280682)
[»] chr8 (2 HSPs)
chr8 (145-185)||(4662912-4662952)
chr8 (144-199)||(26100154-26100210)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 47297864 - 47298127
Alignment:
Q  17 attaagaatagacgttggtttggttctttggtggtaacaattgattttaatttttagtaggttcattctataaaattgattataactaagaatgaatgca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||      ||| ||||||||||||||||||||||||||||| |||||||| |    
T  47297864 attaagaatagacgttggtttggttctttggtggtaacaattgattttaa------gtatgttcattctataaaattgattataactaaaaatgaatgta 47297957  T
Q  117 atgtaaactgatttatgtttggataaatgagttgaactatacatttatatgtaaaaatcaattatagaataaaaactacaaattctaattttcatgtaga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  47297958 atgtaaactgatttatgtttggataaatgagttgaactatacatttatatgtaaaaatcaattatagaataaaaactacaaatcctaattttcatgtaga 47298057  T
Q  217 attaattccggagtgatggtttgaacatgggtttcac--gtactcactttaaaaagatgaaatttggtca 284  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||| ||||||||||||||||||    
T  47298058 attaattccggagtgatggtttgaacatgggtttcacatttactcactttagaaagatgaaatttggtca 47298127  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 374 - 458
Target Start/End: Original strand, 47298234 - 47298318
Alignment:
Q  374 gcaatttcttagttccctttaacttctacggaatcatacttgtagttcctgtgtgaatgcgagattatttgtcatagttcctttg 458  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47298234 gcaatttattagttccctttaacttctacagaatcatacttgtagtttctgtgtgaatgcgagattatttgtcatagttcctttg 47298318  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 315 - 353
Target Start/End: Original strand, 47298176 - 47298214
Alignment:
Q  315 gatctgtgacgggtgtgaaagggaaattattctttctaa 353  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47298176 gatctgtgacgggtgtgaaagggaaattattctttctaa 47298214  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 30473007 - 30472950
Alignment:
Q  148 ttgaactatacatttatatgtaaaaatcaattatagaat-aaaaactacaaattctaa 204  Q
    |||||||||| || ||||||| |||||||||| || ||| ||||||||||||||||||    
T  30473007 ttgaactataaatatatatgtgaaaatcaattctaaaatcaaaaactacaaattctaa 30472950  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 54173323 - 54173370
Alignment:
Q  144 tgagttgaactatacatttatatgtaaaaatcaattatagaataaaaa 191  Q
    |||||||||||||| |||||| ||||||||| ||||||||||||||||    
T  54173323 tgagttgaactataaatttatttgtaaaaattaattatagaataaaaa 54173370  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 25359608 - 25359667
Alignment:
Q  170 aaaatcaattatagaat-aaaaactacaaattctaattttcatgtagaattaattccggag 229  Q
    ||||||||||||||||| ||||||||||||||||||  |||| ||||||| ||||| ||||    
T  25359608 aaaatcaattatagaataaaaaactacaaattctaa-cttcaagtagaatcaattctggag 25359667  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 26382831 - 26382780
Alignment:
Q  85 tataaaattgattataactaagaatgaatgcaatgtaaactgatttatgttt 136  Q
    ||||||||||||||||| ||| |||||||  |||||||||||||||||||||    
T  26382831 tataaaattgattataattaaaaatgaataaaatgtaaactgatttatgttt 26382780  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 1514423 - 1514364
Alignment:
Q  141 aaatgagttgaactatacatttatatgtaaaaatcaattatagaataaaaa-ctacaaat 199  Q
    ||||||||||||| ||| |||| | ||||||||||||||||| |||||||| ||||||||    
T  1514423 aaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaat 1514364  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 47554018 - 47553968
Alignment:
Q  141 aaatgagttgaactatacatttatatgtaaaaatcaattatagaataaaaa 191  Q
    ||||||||||||||||| || ||||||||||||  |||| |||||||||||    
T  47554018 aaatgagttgaactataaatgtatatgtaaaaactaattctagaataaaaa 47553968  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 6590004 - 6590045
Alignment:
Q  164 tatgtaaaaatcaattatagaat-aaaaactacaaattctaa 204  Q
    ||||||||||||||||||| ||| ||||||||||||||||||    
T  6590004 tatgtaaaaatcaattatataataaaaaactacaaattctaa 6590045  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 30850407 - 30850463
Alignment:
Q  144 tgagttgaactatacatttatatgtaaaaatcaattatagaa-taaaaactacaaat 199  Q
    |||||||||||||| |||| ||||| |||||||||| || || ||||||||||||||    
T  30850407 tgagttgaactataaatttgtatgttaaaatcaattctaaaattaaaaactacaaat 30850463  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 17225929 - 17225882
Alignment:
Q  144 tgagttgaactatacatttatatgtaaaaatcaattatagaataaaaa 191  Q
    |||||||||||||| |||| |||||||||||||||| |||||| ||||    
T  17225929 tgagttgaactataaatttgtatgtaaaaatcaattctagaatcaaaa 17225882  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 19601457 - 19601509
Alignment:
Q  148 ttgaactatacatttatatgtaaaaatcaattatagaat-aaaaactacaaat 199  Q
    |||||||||| |||||| ||||||||||| ||||||||| |||| ||||||||    
T  19601457 ttgaactataaatttatttgtaaaaatcagttatagaatcaaaagctacaaat 19601509  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 26280682 - 26280622
Alignment:
Q  144 tgagttgaactatacatttatatgtaaaaatcaattatagaat-aaaaactacaaattcta 203  Q
    |||||| ||||||| |||| || ||||||||||||| | |||| |||||||||||||||||    
T  26280682 tgagtttaactataaatttgtacgtaaaaatcaattttggaatcaaaaactacaaattcta 26280622  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 4662912 - 4662952
Alignment:
Q  145 gagttgaactatacatttatatgtaaaaatcaattatagaa 185  Q
    |||||||||||||||||| | |||||||||||||| |||||    
T  4662912 gagttgaactatacatttgtgtgtaaaaatcaattctagaa 4662952  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 26100154 - 26100210
Alignment:
Q  144 tgagttgaactatacatttatatgtaaaaatcaattatagaat-aaaaactacaaat 199  Q
    |||||||||| ||| |||| | ||||||||||||||||||||| |||| ||||||||    
T  26100154 tgagttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaat 26100210  T

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