View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_low_18 (Length: 462)
Name: NF14473_low_18
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 445
Target Start/End: Complemental strand, 41250128 - 41249710
Alignment:
| Q |
17 |
aatatccgttagttagttagttagttctgaagagaagaaattaaagacattggaaagacatgatcaaatgttttgtattatttgagatgaattttatgag |
116 |
Q |
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| T |
41250128 |
aatatccgttagttagttagttagttctgaagagaagaaattaaagacat-ggaaagacatgatcaaatgttttg---------agatgaattttatgag |
41250039 |
T |
|
| Q |
117 |
actggtatttatttattctgccactggtagttatcagcacagatttggtactttattttcagctggctggatgtgatattgtgatgattgatgtcccaca |
216 |
Q |
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| T |
41250038 |
actggtatttatttattctgccactggtagttatcagcacagatttggtactttattttcagctggctggatgtgatattgtgatgattgatgtcccaca |
41249939 |
T |
|
| Q |
217 |
aaaattatgagtacattttcaaattttgatgagtttaaagatgaatcgatacaggggtgatttgtaatgtagtgatcctatgatgttttgcatagcatga |
316 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41249938 |
aaaattatgagtatattttcaaattttgatgagtttaaagatgaatcgatacaggggggatttgtaatgtagtgatcctctgatgttttgcatagcatga |
41249839 |
T |
|
| Q |
317 |
aatatacattattcaactggttttttatatgcacacacaaaaagctacggttgcaatttctttaaaatataccgtcttgtctttttgttgagtaaatgta |
416 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41249838 |
aatatacattattcaactggttttatatatgcacacacaaaaagctacggttgcaatttctttaaaatataccgtcttgtctttttgttgagtaaatgta |
41249739 |
T |
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| Q |
417 |
atttgtacgtcttcgccatattgacatgt |
445 |
Q |
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| T |
41249738 |
atttgtacgtcttcgccatattgacatgt |
41249710 |
T |
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