View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_low_20 (Length: 448)
Name: NF14473_low_20
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 148 - 431
Target Start/End: Original strand, 2263520 - 2263805
Alignment:
| Q |
148 |
tagtatcaatgttcttacttagcatgcacatgcactaaatatgcttttgaaaaactcaagtattgtctattgaagtaaataggattttcaaaaagcttaa |
247 |
Q |
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| T |
2263520 |
tagtatgaatgttcttacttagcatgcacatgcactaaatatacttttgaaaaactcaagtattgtctattgaagtaaataagattttcaaaaagcttaa |
2263619 |
T |
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| Q |
248 |
gttat-gtcttaaataggct-ggtgatacgcctttgtcggatgatttaacctgtttctatctctaataatgatgttgaattaatatgaactgtcacatct |
345 |
Q |
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| T |
2263620 |
gttattgtcttaaataggctaggtgataggtctttgtcggacgacttaatctgtttctatctctaatagtgatgttgaatcaatataaactgtcacatct |
2263719 |
T |
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| Q |
346 |
tcatttaacgtgtcatgtcatagtatttaacaattgaacttaatatactgttcaacgaacgaaattgctaattcgtaaaacatata |
431 |
Q |
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| T |
2263720 |
tcatttaacgtgtcatgtcatagtatttaacgattgaacttaatgtaatgttcaacgaacgaaattgctaattcgtaaaacatata |
2263805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 2263454 - 2263510
Alignment:
| Q |
19 |
aatctagctatctacactgtattgtctgcatcacattgaaaattaaaaaccataaat |
75 |
Q |
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| T |
2263454 |
aatctagctatctacactgtattgtctgcatcacattgaaaattaaaaaccataaat |
2263510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 360
Target Start/End: Original strand, 21324828 - 21324873
Alignment:
| Q |
315 |
tgatgttgaattaatatgaactgtcacatcttcatttaacgtgtca |
360 |
Q |
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| T |
21324828 |
tgatgtggaattcacatgaactatcacatcttcatttaacgtgtca |
21324873 |
T |
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