View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_low_21 (Length: 445)
Name: NF14473_low_21
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 34 - 443
Target Start/End: Original strand, 2845364 - 2845774
Alignment:
| Q |
34 |
attgaggattacgagactaaacaggactctctaactccctataataactgcaacaatttcccattctattcccacattgacctttagggttccgcagccg |
133 |
Q |
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| T |
2845364 |
attgaggattacgagactaaacaggactctctaactccctataataactgcaacaatttcccattctattcccacattgacctttagggttcagcagccg |
2845463 |
T |
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| Q |
134 |
cagagaatccaaattcgatataaatccatcgtaaactactttagagataacccaaacccgatataattctataatcatatattgtggtcgtcgcagataa |
233 |
Q |
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| T |
2845464 |
cagagaatccaaatttgatataaatccatcgtaaactactttagagataacctaaacccgatataattctatcatcatatattgtggtcgtcgcagataa |
2845563 |
T |
|
| Q |
234 |
tccaaatctgatataaatatatcaaaaacttcagcccagtcgcaaaggatccaaatccgataaaattatctcatcgcataccacagtcgtagaggatcca |
333 |
Q |
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| T |
2845564 |
tctaaatccgatataaatatatcaaaaactttagcccagtcgcaaaggatccaaatccgataaaattatctcatcgcataccacagtcgtagaggatcca |
2845663 |
T |
|
| Q |
334 |
aatccgatataaatatatatcaaaaacccatcttttagccct-nnnnnnnnnnnccttttcttttctatatctcagagttcctcttcactttcctcagta |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
2845664 |
aatccgatataaatatatatcaaaaacccatcttttagccctaaaaaaataaaaccttttcttttctatatctcagagttcctcttcactttcctctgca |
2845763 |
T |
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| Q |
433 |
taatttaccca |
443 |
Q |
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| T |
2845764 |
taatttaccca |
2845774 |
T |
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