View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_low_22 (Length: 431)
Name: NF14473_low_22
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_low_22 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 3 - 431
Target Start/End: Original strand, 31292336 - 31292764
Alignment:
| Q |
3 |
ttcaattcatagacacctacaaagacaatgaaataacaaaaatcctaaacttttcactttgacactctttatcacacacttaatcctaaacttgtcatct |
102 |
Q |
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| T |
31292336 |
ttcaattcatagacacctacaaagacaatgaaataacaaaaatcctaaacttttcactttgacactctttatcacacacttaatcctaaacttgtcatct |
31292435 |
T |
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| Q |
103 |
tcattctcttagattttttccttttcagattgaaaagggcttgtgatccttttgagagaaaaaagttgcttcaaaaaggtacaaatacatttgcctgatc |
202 |
Q |
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| T |
31292436 |
tcattctcttagattttttccttttcagattgaaaagggcgtgtgatccttttgagagaaaaaagttgcttcaaaaaggtacaaatacatttgcctgatc |
31292535 |
T |
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| Q |
203 |
ttttgaaacgaaatcctacttttgaaacttaaaagtattggacacttggtccggactacttcagctctcttagtattcctcgtgaatctaagttggatta |
302 |
Q |
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| T |
31292536 |
ttttgaaacgaaatcctacttttgaaacttaaaagtattggacacttggtccggactacttcagctctattagtattcctcgtgaatctaagttggatta |
31292635 |
T |
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| Q |
303 |
ttccgatatcctacttcagactgaaagtggaaactagagctgttggtgtaaagtagccaacagatatttgattaaaaatatacgctgaataaaaaattgt |
402 |
Q |
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| T |
31292636 |
ttcagatatcctacttcagactgaaagtggaaactagagctgttggtgtaaagtagccaacagatatttgattaaaaatatacgctgaataaaaaattgt |
31292735 |
T |
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| Q |
403 |
gataagaagctacaatgaatttcatacat |
431 |
Q |
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| T |
31292736 |
gataagaagctacaatgaatttcatacat |
31292764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 387
Target Start/End: Original strand, 31255645 - 31255733
Alignment:
| Q |
299 |
attattccgatatcctacttcagactgaaagtggaaactagagctgttggtgtaaagtagccaacagatatttgattaaaaatatacgc |
387 |
Q |
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| T |
31255645 |
attattctgatatcctacttcagactgaaagttgaaaccagagttgttggtgtgaagtagccaacagatacatgattaaacatatacgc |
31255733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 31306764 - 31306850
Alignment:
| Q |
118 |
ttttccttttcagattgaaaagggcttgtgatccttttgagagaaaaaagttgcttcaaaaaggtacaaatacatttgcctgatcttt |
205 |
Q |
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| T |
31306764 |
ttttccttttcagatggcaa-gggcatgtgatccttttgacacaaaaaagatgcttcagaaatgtgcaaatatatttccctgaacttt |
31306850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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