View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_low_24 (Length: 410)
Name: NF14473_low_24
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_low_24 |
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| [»] scaffold0272 (1 HSPs) |
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| [»] scaffold0016 (3 HSPs) |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 400
Target Start/End: Complemental strand, 33715474 - 33715091
Alignment:
| Q |
17 |
accatctttaatcagtttgagagcgagcaattaaggagtctgattcaaccagaatgtgctcatgacctttaaagtggcccatatcaaataggttctaatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||| |
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| T |
33715474 |
accatctttaatcagtttgagagcgagcaattaaggagtctgattcaaccagaatgtgctcatgacctctaaagtggcccatatcaaacaggtcctaatg |
33715375 |
T |
|
| Q |
117 |
tagaaggaaaagacagccttgaaattaccttcactaccgcgtatgacaccaccgcagccagcaactcctctgtcaattgccacaaaatctgctggaggtt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
33715374 |
tagaaggaaaagacagccttgaaattaccttcactaccgcgtatgacaccaccacagccagcaactcctctgtcattcgccacaaaatctgctggaggtt |
33715275 |
T |
|
| Q |
217 |
acttccttctactatttaccggatttccatctctcatggcataaatagtactagcaatgtgcgaaggagggattcctcgtgtacattacatcgcagaaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33715274 |
acttccttctactatttaccggatttccatctctcatggcataaatagtactagcaatgtgcgaaggagggattcctcgtgtacattacatcgcagaaaa |
33715175 |
T |
|
| Q |
317 |
tcgttatcaacacaagaaacaagccgcgcaacacattttcttctatcattaatttaataaaaactttgatgttaataccctatg |
400 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33715174 |
tcgttatcaacacaagaaacaagctgcccaacacattttcttctatcattaatttaataaaaactttgatgttaataccctatg |
33715091 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 21183467 - 21183388
Alignment:
| Q |
111 |
ctaatgtagaaggaaaagacagccttgaaattaccttcactaccgcgtatgacaccaccgcagccagcaactcctctgtc |
190 |
Q |
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|||||||||| |||||||||| | |||||||||||||||||| | | |||||||||||||||| ||||||||||| |||| |
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| T |
21183467 |
ctaatgtagacggaaaagacaacattgaaattaccttcactatcacatatgacaccaccgcagtcagcaactcctttgtc |
21183388 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 21137545 - 21137482
Alignment:
| Q |
111 |
ctaatgtagaaggaaaagacagccttgaaattaccttcactaccgcgtatgacaccaccgcagc |
174 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| |||| |
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| T |
21137545 |
ctaatgtagaaggaaaagacagccatgaaattaccttcacaattgcgtatgacaccaccacagc |
21137482 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 21313211 - 21313170
Alignment:
| Q |
110 |
tctaatgtagaaggaaaagacagccttgaaattaccttcact |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
21313211 |
tctaatgtagaaggaaaagacagccttgaaattaccttcact |
21313170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 33704804 - 33704760
Alignment:
| Q |
136 |
tgaaattaccttcactaccgcgtatgacaccaccgcagccagcaa |
180 |
Q |
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| T |
33704804 |
tgaaattaccttcactatcgcgtatgacacctccgcagccagcaa |
33704760 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 10310 - 10398
Alignment:
| Q |
112 |
taatgtagaaggaaaagacagccttgaaattaccttcactaccgcgtatgacaccaccgcagccagcaactcctctgtcaattgccaca |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||||||| || |||||| |
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| T |
10310 |
taatgtagagggaaaagacagccttgaaattaccttcactttcgcgtatgccaacacggcagccagcaactcctctgtcgatcgccaca |
10398 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 71608 - 71696
Alignment:
| Q |
112 |
taatgtagaaggaaaagacagccttgaaattaccttcactaccgcgtatgacaccaccgcagccagcaactcctctgtcaattgccaca |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||||||| || |||||| |
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| T |
71608 |
taatgtagagggaaaagacagccttgaaattaccttcactttcgcgtatgccaacacggcagccagcaactcctctgtcgatcgccaca |
71696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 46763 - 46842
Alignment:
| Q |
111 |
ctaatgtagaaggaaaagacagccttgaaattaccttcactaccgcgtatgacaccaccgcagccagcaactcctctgtc |
190 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||||| ||||||| |
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| T |
46763 |
ctaatatagaaggaaaagacagccttgaaattaacttcactactgcgtatgataccaccgcagctagcaacttctctgtc |
46842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 61413 - 61492
Alignment:
| Q |
111 |
ctaatgtagaaggaaaagacagccttgaaattaccttcactaccgcgtatgacaccaccgcagccagcaactcctctgtc |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || | | |||||||| |||||| ||| ||| |||| |||| |
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| T |
61413 |
ctaatgtagaaggaaaagacagccttgaaattaccttcggtatcacatatgacactaccgcatccatcaattcctttgtc |
61492 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 13263 - 13206
Alignment:
| Q |
133 |
ccttgaaattaccttcactaccgcgtatgacaccaccgcagccagcaactcctctgtc |
190 |
Q |
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|||||||||||||||| || ||| ||||| ||||||||||||| ||| ||||||||| |
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| T |
13263 |
ccttgaaattaccttccttatcgcatatgataccaccgcagccaacaaatcctctgtc |
13206 |
T |
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