View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_low_29 (Length: 378)
Name: NF14473_low_29
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 45277253 - 45277604
Alignment:
| Q |
11 |
cagagaatggaatatcaatattctttcataaataaaagctaaaccaataggtatagtcaactgtatgtatgataaacagattcttttctgtggctgtaag |
110 |
Q |
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| T |
45277253 |
cagagaatggaatatcaatattctttcataaataaaagctaaaccaataggtatagtcaactgtatgtatgataaacagattcttttctgtggctgtaaa |
45277352 |
T |
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| Q |
111 |
gnnnnnnnn-cttaagtttggtcctttacttcactaagaagatgttgcttactggaacttgctttcaagagttttctttttattcccacttaactaaaga |
209 |
Q |
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| T |
45277353 |
gaaaaaaaaacttaagtttggtcctttacttcactaagaagatgttgcttactggaacttgctttcaagagttttctttttattcccacttaactaaaga |
45277452 |
T |
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| Q |
210 |
tttttgaaagattcactccctcactagaaaattgaaaagaatataaaagtctctatatatgtgtatatcttatataaggttgaatccattgcttaacagc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45277453 |
tttttgaaagattcactccctcactagaaaattgaaaagaatataaaagtctctatatatgtgtatatcttatataaggttgaatccattgcttaacagc |
45277552 |
T |
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| Q |
310 |
agcaacaaaagcaatgcactttgtaggtggtaatcctttaaatgggtgtctt |
361 |
Q |
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| T |
45277553 |
agcaacaaaagcaatgcactttgtaggtggtaatcctttaaatgggtgtctt |
45277604 |
T |
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