View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_low_34 (Length: 359)
Name: NF14473_low_34
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 336
Target Start/End: Complemental strand, 31601310 - 31600982
Alignment:
| Q |
8 |
cataattctccgccttttcccttgcagtatcaaccacatacttggaattgttaaagatgtttctacaacatttgtagcaacaacaacaagcctctttccc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31601310 |
cataattctccgccttttcccttgcagtatcaaccacatacttggaattgttaaagatgtttctacaacatttgtagcaacaacaacaagcctctttccc |
31601211 |
T |
|
| Q |
108 |
tccttaactccttcaaatagacgaagttgagctgcagcaggcagcacagcgtaaagctctagaacgaagagtgcacctggagaaggactgtgactttctc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31601210 |
tccttaactccttcaaatagacgaagttgagctgcagcaggcagcacagcgtaaagctctagaacgaagagtgcacctggagaaggactgtgactttctc |
31601111 |
T |
|
| Q |
208 |
tagctatcttctcactgcaaacttttgatttgtctaaaccctcttctgtattcacagaaaatgtcgtcatctcatttgaggaatttaatggagcttgccc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31601110 |
tagctatcttctcactgcaaacttttgatttgtctaaaccctcttctgtattcacagaaaatgtcgtcatctcatttgaggaatttaatggagcttgccc |
31601011 |
T |
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| Q |
308 |
agacaatttttcaaaagcatccttcaaag |
336 |
Q |
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| T |
31601010 |
agacaatttttcaaaagcatccttcaaag |
31600982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 8 - 263
Target Start/End: Original strand, 7992368 - 7992630
Alignment:
| Q |
8 |
cataattctccgccttttcccttgcagtatcaaccacatactt-------ggaattgttaaagatgtttctacaacatttgtagcaacaacaacaagcct |
100 |
Q |
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| T |
7992368 |
cataattcttcaccttttcccttccagtatcaaccacatacttaatccctggaattgttaaagatgtttctgcaacatttgtagcaacaacaactagtct |
7992467 |
T |
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| Q |
101 |
ctttccctccttaactccttcaaatagacgaagttgagctgcagcaggcagcacagcgtaaagctctagaacgaagagtgcacctggagaaggactgtga |
200 |
Q |
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|| ||||||||| ||||| ||||||| |||||||||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||| | | |||| |
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| T |
7992468 |
ctctccctccttgactccatcaaatacacgaagttgagctgcagcaggcagcatagcataaagtggtagaacaaagagtgcacctggagaggaatcgtga |
7992567 |
T |
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| Q |
201 |
ctttctctagctatcttctcactgcaaacttttgatttgtctaaaccctcttctgtattcaca |
263 |
Q |
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||||||||||||| ||||| |||| |||||| |||| ||||||||| ||||||||||||||| |
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| T |
7992568 |
ttttctctagctattttctccctgccaactttcgattggtctaaaccatcttctgtattcaca |
7992630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 8 - 263
Target Start/End: Complemental strand, 49776919 - 49776657
Alignment:
| Q |
8 |
cataattctccgccttttcccttgcagtatcaaccacatactt-------ggaattgttaaagatgtttctacaacatttgtagcaacaacaacaagcct |
100 |
Q |
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||||||||| | ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
49776919 |
cataattcttcaccttttcccttccagtatcaaccacatacttaatccctggaattgttaaagatgtttctgcaacatttgtagcaacaacaacaagtct |
49776820 |
T |
|
| Q |
101 |
ctttccctccttaactccttcaaatagacgaagttgagctgcagcaggcagcacagcgtaaagctctagaacgaagagtgcacctggagaaggactgtga |
200 |
Q |
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| ||||||||| ||||| ||||||| |||||||||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||| | | ||| |
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| T |
49776819 |
ttctccctccttgactccatcaaatacacgaagttgagctgcagcaggcagcatagcataaaggggtagaacaaagagtgcacctggagaggaatcatga |
49776720 |
T |
|
| Q |
201 |
ctttctctagctatcttctcactgcaaacttttgatttgtctaaaccctcttctgtattcaca |
263 |
Q |
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||||||||||||| ||||| |||| ||||||||||| |||||||| ||||||||||||||| |
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| T |
49776719 |
ttttctctagctattttctccctgccaacttttgattggtctaaactgtcttctgtattcaca |
49776657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 49776658 - 49776604
Alignment:
| Q |
280 |
catttgaggaatttaatggagcttgcccagacaatttttcaaaagcatccttcaa |
334 |
Q |
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||||||||||| |||||| |||||||||||||| |||||||||||| ||||||| |
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| T |
49776658 |
catttgaggaacttaatgttgcttgcccagacaagttttcaaaagcagccttcaa |
49776604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 7992629 - 7992683
Alignment:
| Q |
280 |
catttgaggaatttaatggagcttgcccagacaatttttcaaaagcatccttcaa |
334 |
Q |
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||||||||||| |||||| |||||||||||||| ||||| |||||| ||||||| |
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| T |
7992629 |
catttgaggaacttaatgttgcttgcccagacaagttttcgaaagcagccttcaa |
7992683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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