View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_low_37 (Length: 345)
Name: NF14473_low_37
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_low_37 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 345
Target Start/End: Original strand, 37066275 - 37066607
Alignment:
| Q |
13 |
caaaggtagtaacatattggtatgtgaaaaaggagttaaaattggagactttggttgtgcaaagatgatcgatgaaattgtgccggctgccggaacaccg |
112 |
Q |
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| T |
37066275 |
caaaggtagtaacatattggtatgtgaaaaaggagttaaaataggagactttggttgtgcaaagatgatcgatgaaattgcgccagctgccggaacaccg |
37066374 |
T |
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| Q |
113 |
atgtatatggcgccggaggtggcgcgcagcgaagaacaagggttcccttgtgatgtttggtcacttggttgcactattgttgaaatggcaactgggtttt |
212 |
Q |
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| T |
37066375 |
atgtatatggcgccggaggtggcgcgcggcgaagaacaagggttcccttgtgatgtttggtcacttggttgcactattgttgaaatggcaactggttttt |
37066474 |
T |
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| Q |
213 |
caccttggtccaatgtggaagactctgttcatgttctgtatcgtgtttcatattctgacgaagttcctatgattccttgttttttatctgaacaagcaaa |
312 |
Q |
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| T |
37066475 |
caccttggtccaatgtggaagactctgttcatgttctgtatcgtgttgcatattctgacgaagttcctatgattccttgttttttatctgaacaagcaaa |
37066574 |
T |
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| Q |
313 |
ggatttcttggagaagtgcttaaggagggattc |
345 |
Q |
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| T |
37066575 |
ggatttcttggagaagtgcttaaggagggattc |
37066607 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 17501336 - 17501263
Alignment:
| Q |
143 |
gaagaacaagggttcccttgtgatgtttggtcacttggttgcactattgttgaaatggcaactgggttttcacc |
216 |
Q |
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| T |
17501336 |
gaagaacaagagttttctagtgatatttggtcacttggttgcactataattgaaatggcaactggttcttcacc |
17501263 |
T |
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