View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_low_4 (Length: 581)
Name: NF14473_low_4
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_low_4 |
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| [»] scaffold0549 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 148 - 566
Target Start/End: Original strand, 11361191 - 11361607
Alignment:
| Q |
148 |
attagcattagaatgttagcaaccaaaaataaacataaatattataatgttagtaaccaaaagtaaatattaaaattttgatgtaattcttnnnnnnnnn |
247 |
Q |
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| T |
11361191 |
attagcattagaatgttagcaaccaaaaatatacataaatattagaatgttagtaaccaaaagtaaatattaaaattttcatgtaattcttaaaaaaaaa |
11361290 |
T |
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| Q |
248 |
nnnnntcatatagttattttaatccaaagttgaagtaggcaaataggttttgtatagtgtatattcaaagattcatgatagatttgattttcatgtctaa |
347 |
Q |
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| T |
11361291 |
at---tcatatagttattttaatccaaagttgaagtaggcaaataggttttgtatagtgtatattcaaggattcatgatagatttgattttcatgtctaa |
11361387 |
T |
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| Q |
348 |
aatgatggggcccttcttatcttcatggaaatccatgaccataagaaaatcatacaatggatagctatggtatatatgtgcatttatggctttcacaaaa |
447 |
Q |
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| T |
11361388 |
aatgatggggcccttcttatcttcatggaaatccatgaccataagaaaatcatacaatggatagctatggtatatatgtgcatttat-gctttcacaaaa |
11361486 |
T |
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| Q |
448 |
aatta--ataaatattacctatatttctggagataaatttaagaactgaaatttcacatctttgacnnnnnnntcaataaattgggaagtaataggaaga |
545 |
Q |
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| T |
11361487 |
aattactataaatattacctatatttctggagataaatttaagaactgaaatttcacatctttgacaaaaaaataaataaattgggaagtaataggaaga |
11361586 |
T |
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| Q |
546 |
aaattttccagtgttgttatt |
566 |
Q |
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| T |
11361587 |
aaattttccagtgtttttatt |
11361607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 11361044 - 11361150
Alignment:
| Q |
9 |
caagaatatttataccaacatcagcttgagtaattttttgcatc--------cctcagttctacaaccagtcttctctgacacaacagaaaagaaaatat |
100 |
Q |
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| T |
11361044 |
caagaatatttgtaccaacatcagcttgagtaattttttgcatcaagagagacctcagttctacaaccagtcttctctgacacaacagaaaagaaaatat |
11361143 |
T |
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| Q |
101 |
attcaag |
107 |
Q |
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|||||| |
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| T |
11361144 |
cttcaag |
11361150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 395
Target Start/End: Original strand, 11339432 - 11339507
Alignment:
| Q |
322 |
atgatagatttgattttcatgtctaaaatgatg--gggcccttcttatcttcatggaaatccatgaccataagaaa |
395 |
Q |
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| T |
11339432 |
atgattgatttgattttcatttcttaaatgatgatgggcccttcataccttcatgtgaattcatgaccataagaaa |
11339507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 11339338 - 11339387
Alignment:
| Q |
254 |
catatagttattttaatccaaagttgaagtaggcaaataggttttgtata |
303 |
Q |
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| T |
11339338 |
catatagttatgttaatcctatgatgaagtcggcaaataggttttgtata |
11339387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0549 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0549
Description:
Target: scaffold0549; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 395
Target Start/End: Original strand, 531 - 606
Alignment:
| Q |
322 |
atgatagatttgattttcatgtctaaaatgatg--gggcccttcttatcttcatggaaatccatgaccataagaaa |
395 |
Q |
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| T |
531 |
atgattgatttgattttcatttcttaaatgatgatgggcccttcataccttcatgtgaattcatgaccataagaaa |
606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0549; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 437 - 486
Alignment:
| Q |
254 |
catatagttattttaatccaaagttgaagtaggcaaataggttttgtata |
303 |
Q |
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| T |
437 |
catatagttatgttaatcctatgatgaagtcggcaaataggttttgtata |
486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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