View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14473_low_45 (Length: 315)

Name: NF14473_low_45
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14473_low_45
NF14473_low_45
[»] chr2 (1 HSPs)
chr2 (19-307)||(37066981-37067269)


Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 37067269 - 37066981
Alignment:
Q  19 aaatgtccgcgacaatactttagtttaccaacatacaatatagcaacctaccaaaacataaatttagttaggctagtggccaaaaaagtgtctaaaacat 118  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37067269 aaatgtccgcgacaatactttagtttaccaacatacaatataacaacctaccaaaacataaatttagttaggctagtggccaaaaaagtgtctaaaacat 37067170  T
Q  119 taactgcaatagaagttacaatggcaagtttgtaatatgagtgttttaaatcataacagaaaatgttcccaaataaccaaattataaaaaatctaatgtt 218  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37067169 taactgcaatagaaattacaatggcaagtttgtaatatgagtgttttaaatcataacaaaaaatgttcccaaataaccaaattataaaaaatctaatgtt 37067070  T
Q  219 gattggggcatcaaccttccaatgcctctcccaaaattaaggctattagctacataaccaacatccctaatcttacaattagaataatc 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37067069 gattggggcatcaaccttccaatgcctctcccaaaattaaggctattagctacataactaacatccctaatcttacaattagaataatc 37066981  T

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