View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_low_46 (Length: 315)
Name: NF14473_low_46
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 40655556 - 40655838
Alignment:
| Q |
14 |
atactgagttcggcaacattaatgatgcatttaaggtgtttgatgatatttcttacaagaactcaacgtcctggaacatttgcttaaaaggtttgtttaa |
113 |
Q |
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| T |
40655556 |
atactgagttcggcaacattaatgatgcattgaaggtgtttgatgatatttcttacaagaactcaacgtcctggaacatttgcttaaaagggttgtttaa |
40655655 |
T |
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| Q |
114 |
aagtggtcaagttggtaaggcatgttacatgtttgatgaaatgcctgttagagatgttgttagttggaacacaatgatttcgggttatgcttcttgtgga |
213 |
Q |
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| T |
40655656 |
aagtggtcaagttggtaaggcatgttacatgtttgatgaaatgcctgttagagatgttgttagttggaacacaatgatttcgggttatgcttcttgtgga |
40655755 |
T |
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| Q |
214 |
ttttctagtcatgccttggggttttttgttgaaatgcaaggtgctggtgtgagaccaagtgggtttacgttttccattttgac |
296 |
Q |
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| T |
40655756 |
ttttctagtcatgccttgggggtttttgttgaaatgcaaggtgctggtgtgagaccaagtgggtttactttttccattttgac |
40655838 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 11370169 - 11370209
Alignment:
| Q |
143 |
tgtttgatgaaatgcctgttagagatgttgttagttggaac |
183 |
Q |
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| T |
11370169 |
tgtttgatgaaatgtttgttagagatgttgttagttggaac |
11370209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 14171275 - 14171317
Alignment:
| Q |
143 |
tgtttgatgaaatgcctgttagagatgttgttagttggaacac |
185 |
Q |
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| T |
14171275 |
tgtttgataaaatgcctgttcgagatgttgttacttggaacac |
14171317 |
T |
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