View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14473_low_52 (Length: 291)
Name: NF14473_low_52
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_low_52 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 23046393 - 23046130
Alignment:
| Q |
17 |
tttaggtcataatgcaactatatgttttacgtggttaattttattaactgtgtaggtcaaggaaaaacaagaatgctgcaagtggaaataattcagaatc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23046393 |
tttaggtcataatgcaactatatgttttacgtggttaattttattaactgtgtaggtcaaggaaaaacaagaatgctgcaagtggaaataattcagaatc |
23046294 |
T |
|
| Q |
117 |
tggagctgcaggtaccttttcagttttcaatcatcatgctctatgagattgtagcatataaatgtatttattatgtttccatcttttttaatttactatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23046293 |
tggagctgcaggtaccttttcagttttcaatcatcatgctctatgagattgtagcatataaatgtatttattatgtttccatcttttttaatttactatc |
23046194 |
T |
|
| Q |
217 |
tttatgtttagaatgagaaatgttttattttacgaatgcaaaacacatgaccaaacttgttcat |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23046193 |
tttatgtttagaatgagaaatgttttattttacgaatgcaaaacacatgaccaaacttgttcat |
23046130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 22514335 - 22514219
Alignment:
| Q |
22 |
gtcataatgcaactatatgttttacgtggttaattttattaactgtgtaggtcaaggaaaaacaagaatgctgcaagtggaaataattcagaatctggag |
121 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22514335 |
gtcataatgcaactacatgttttatgtggttaattttatttactgtgtaggtcaaggaaaaagaagaatgctgcaagtggagataattcagaatctggag |
22514236 |
T |
|
| Q |
122 |
ctgcaggtaccttttca |
138 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
22514235 |
ctgcaggtaccatttca |
22514219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 22512693 - 22512812
Alignment:
| Q |
18 |
ttaggtcataatgcaactatatgttttacgtggttaattttattaactgtgtaggtcaaggaaaaacaagaatgctgcaagtggaaataattcagaatct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| | ||||||| | | ||||||| |||||||| ||||||||| |||||||||||||| |
|
|
| T |
22512693 |
ttaggtcataatgcaactatatgttttatgtggttaattttatttattgtgtagatta-ggaaaaagaagaatgcagcaagtggagataattcagaatct |
22512791 |
T |
|
| Q |
118 |
ggagctgcaggtaccttttca |
138 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
22512792 |
ggagcagcaggtaccttttca |
22512812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 280
Target Start/End: Complemental strand, 22514152 - 22514101
Alignment:
| Q |
229 |
atgagaaatgttttattttacgaatgcaaaacacatgaccaaacttgttcat |
280 |
Q |
| |
|
|||||||||||| ||| ||||||||| ||||| |||||||||||||||||| |
|
|
| T |
22514152 |
atgagaaatgttgtatattacgaatgtgaaacatatgaccaaacttgttcat |
22514101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 22512815 - 22512860
Alignment:
| Q |
175 |
taaatgtatttattatgtttccatcttttttaatttactatcttta |
220 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
22512815 |
taaatgtatttatgttgtttccaccttttttaatttactatgttta |
22512860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 9494531 - 9494597
Alignment:
| Q |
65 |
tgtgtaggtcaaggaaaaacaagaatgctgcaagtggaaataattcagaatctggagctgcaggtac |
131 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
9494531 |
tgtgtaggtcaaggagaaagaagaatgctgcaagtggagataattcagaatctggagttgcaggtac |
9494597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University