View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14473_low_53 (Length: 288)

Name: NF14473_low_53
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14473_low_53
NF14473_low_53
[»] chr4 (7 HSPs)
chr4 (171-280)||(51389502-51389611)
chr4 (104-166)||(51389164-51389226)
chr4 (1-77)||(54036513-54036589)
chr4 (41-78)||(14593827-14593864)
chr4 (21-78)||(17683358-17683415)
chr4 (1-74)||(48326555-48326628)
chr4 (1-77)||(4511825-4511901)
[»] chr5 (7 HSPs)
chr5 (108-166)||(42831259-42831317)
chr5 (2-71)||(31284379-31284448)
chr5 (1-55)||(3141528-3141582)
chr5 (40-77)||(26660445-26660482)
chr5 (40-77)||(26932037-26932074)
chr5 (1-77)||(14206400-14206476)
chr5 (41-77)||(36548415-36548451)
[»] chr1 (6 HSPs)
chr1 (104-166)||(49275785-49275847)
chr1 (1-79)||(5309035-5309113)
chr1 (108-165)||(49276578-49276635)
chr1 (20-77)||(27687522-27687579)
chr1 (41-77)||(11097919-11097955)
chr1 (41-77)||(35846354-35846390)
[»] chr3 (5 HSPs)
chr3 (108-166)||(40024975-40025033)
chr3 (111-166)||(40025957-40026012)
chr3 (41-78)||(2482709-2482746)
chr3 (2-79)||(30580131-30580208)
chr3 (1-77)||(36318266-36318342)
[»] chr2 (5 HSPs)
chr2 (108-166)||(41405917-41405975)
chr2 (1-49)||(4738556-4738604)
chr2 (11-79)||(25801807-25801875)
chr2 (1-77)||(29795447-29795523)
chr2 (41-77)||(39449267-39449303)
[»] chr8 (3 HSPs)
chr8 (117-155)||(32175904-32175942)
chr8 (40-77)||(11223893-11223930)
chr8 (26-79)||(22706249-22706302)
[»] chr7 (3 HSPs)
chr7 (11-77)||(28862075-28862141)
chr7 (41-79)||(42663082-42663120)
chr7 (1-77)||(22330615-22330691)
[»] scaffold0005 (1 HSPs)
scaffold0005 (41-78)||(223514-223551)
[»] chr6 (1 HSPs)
chr6 (1-53)||(28549005-28549057)


Alignment Details
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 171 - 280
Target Start/End: Original strand, 51389502 - 51389611
Alignment:
Q  171 gtgaaaatagcagaaaatagaagaaggatcgagaagtttctttctttccgcaaaagcccacaccgatatacctttcgtaacggccaaggcgtgaatcact 270  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51389502 gtgaaaatagcagaaaacagaagaaggatcgagaagtttcttgctttccgcaaaagcccacaccgatatacctttcgtaacggccaaggcgtgaatcact 51389601  T
Q  271 atttcatctc 280  Q
    ||||||||||    
T  51389602 atttcatctc 51389611  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 51389164 - 51389226
Alignment:
Q  104 gaaagtaccccataacttggagttgtctcgtaccagaaaaatctaaaaagtatggtatttttg 166  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  51389164 gaaaataccccataactttgagttgtctcgtaccagaaaaatctaaaaagtatggtatttttg 51389226  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 54036513 - 54036589
Alignment:
Q  1 gaagagaaaaaataagatgataatatgagcatgatagatgaagttgtcacaaaatggatacacaaatatcatttctc 77  Q
    ||||||| | |||||||  ||||| |||| |||| |||| ||||||||||||||||| |  ||||||||||||||||    
T  54036513 gaagagagagaataagagaataatttgagtatgagagataaagttgtcacaaaatggttgtacaaatatcatttctc 54036589  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 14593864 - 14593827
Alignment:
Q  41 aagttgtcacaaaatggatacacaaatatcatttctca 78  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  14593864 aagttgtcacaaaatggatattcaaatatcatttctca 14593827  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 17683415 - 17683358
Alignment:
Q  21 taatatgagcatgatagatgaagttgtcacaaaatggatacacaaatatcatttctca 78  Q
    ||||||||| |||| |||| ||||||||| |||||||||   ||||||||||||||||    
T  17683415 taatatgagtatgagagataaagttgtcataaaatggatgttcaaatatcatttctca 17683358  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 48326628 - 48326555
Alignment:
Q  1 gaagagaaaaaataagatgataatatgagcatgatagatgaagttgtcacaaaatggatacacaaatatcattt 74  Q
    ||||||| | |||||||||||||| |||| |||| |||  ||||||||||||| ||| |  |||||||||||||    
T  48326628 gaagagagagaataagatgataatgtgagtatgagagaaaaagttgtcacaaagtggttgtacaaatatcattt 48326555  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4511901 - 4511825
Alignment:
Q  1 gaagagaaaaaataagatgataatatgagcatgatagatgaagttgtcacaaaatggatacacaaatatcatttctc 77  Q
    ||||||| | |||||||  ||||| |||| |||| |||  ||||||||| ||||||| || ||||||||||||||||    
T  4511901 gaagagagagaataagaatataatgtgagtatgagagagaaagttgtcataaaatggttatacaaatatcatttctc 4511825  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 42831317 - 42831259
Alignment:
Q  108 gtaccccataacttggagttgtctcgtaccagaaaaatctaaaaagtatggtatttttg 166  Q
    |||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  42831317 gtaccccacaacttggagttgtttggtaccagaaaaatctaaaaagtatggtatttttg 42831259  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 31284379 - 31284448
Alignment:
Q  2 aagagaaaaaataagatgataatatgagcatgatagatgaagttgtcacaaaatggatacacaaatatca 71  Q
    |||||||| ||||| | ||||||||||| |||| |||  |||||||||||||||||||  ||||||||||    
T  31284379 aagagaaagaataaaaggataatatgagtatgagagagaaagttgtcacaaaatggatgtacaaatatca 31284448  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 3141582 - 3141528
Alignment:
Q  1 gaagagaaaaaataagatgataatatgagcatgatagatgaagttgtcacaaaat 55  Q
    ||||||| | |||||||||||||| |||| |||||||| |||||||||| |||||    
T  3141582 gaagagagagaataagatgataatgtgagtatgatagaggaagttgtcaaaaaat 3141528  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 26660445 - 26660482
Alignment:
Q  40 gaagttgtcacaaaatggatacacaaatatcatttctc 77  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  26660445 gaagttgtcacaaaatggatgtacaaatatcatttctc 26660482  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 26932037 - 26932074
Alignment:
Q  40 gaagttgtcacaaaatggatacacaaatatcatttctc 77  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  26932037 gaagttgtcacaaaatggatgtacaaatatcatttctc 26932074  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 14206476 - 14206400
Alignment:
Q  1 gaagagaaaaaataagatgataatatgagcatgatagatgaagttgtcacaaaatggatacacaaatatcatttctc 77  Q
    ||||||| | ||||||| |||||| |||| |||| |||  ||||||||| ||||||| |  ||||||||||||||||    
T  14206476 gaagagagataataagaggataatgtgagtatgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctc 14206400  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 36548415 - 36548451
Alignment:
Q  41 aagttgtcacaaaatggatacacaaatatcatttctc 77  Q
    ||||||||||||||||| || ||||||||||||||||    
T  36548415 aagttgtcacaaaatggttatacaaatatcatttctc 36548451  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 49275847 - 49275785
Alignment:
Q  104 gaaagtaccccataacttggagttgtctcgtaccagaaaaatctaaaaagtatggtatttttg 166  Q
    |||||||||||| ||||||||||||| | || |||||||||||||||||||||||||||||||    
T  49275847 gaaagtaccccacaacttggagttgtgtggtgccagaaaaatctaaaaagtatggtatttttg 49275785  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 5309035 - 5309113
Alignment:
Q  1 gaagagaaaaaataagatgataatatgagcatgatagatgaagttgtcacaaaatggatacacaaatatcatttctcat 79  Q
    ||||||| | |||||||||||||||||||  ||||||| |||||||||||||| ||| |  ||||||||||||||||||    
T  5309035 gaagagagagaataagatgataatatgagtctgatagaggaagttgtcacaaagtggttgtacaaatatcatttctcat 5309113  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 49276578 - 49276635
Alignment:
Q  108 gtaccccataacttggagttgtctcgtaccagaaaaatctaaaaagtatggtattttt 165  Q
    |||||||| ||||||||||||| | |||| |||||||||||||||||| |||||||||    
T  49276578 gtaccccacaacttggagttgtgtggtacaagaaaaatctaaaaagtagggtattttt 49276635  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 27687522 - 27687579
Alignment:
Q  20 ataatatgagcatgatagatgaagttgtcacaaaatggatacacaaatatcatttctc 77  Q
    ||||| |||| |||| |||| ||||||||||||||||| |  ||||||||||||||||    
T  27687522 ataatgtgagtatgagagataaagttgtcacaaaatggttgtacaaatatcatttctc 27687579  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 11097919 - 11097955
Alignment:
Q  41 aagttgtcacaaaatggatacacaaatatcatttctc 77  Q
    |||||||||||||||||||  ||||||||||||||||    
T  11097919 aagttgtcacaaaatggatgtacaaatatcatttctc 11097955  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 35846354 - 35846390
Alignment:
Q  41 aagttgtcacaaaatggatacacaaatatcatttctc 77  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  35846354 aagttgtcacaaagtggatatacaaatatcatttctc 35846390  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 40025033 - 40024975
Alignment:
Q  108 gtaccccataacttggagttgtctcgtaccagaaaaatctaaaaagtatggtatttttg 166  Q
    |||||||  ||||||||||||| | ||||||||||||||| ||||||| ||||||||||    
T  40025033 gtaccccgcaacttggagttgtgtggtaccagaaaaatcttaaaagtaaggtatttttg 40024975  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 40025957 - 40026012
Alignment:
Q  111 ccccataacttggagttgtctcgtaccagaaaaatctaaaaagtatggtatttttg 166  Q
    ||||| ||||||||||||| |  || ||||||||||||||||||| ||||||||||    
T  40025957 ccccacaacttggagttgtgtgttagcagaaaaatctaaaaagtagggtatttttg 40026012  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 2482709 - 2482746
Alignment:
Q  41 aagttgtcacaaaatggatacacaaatatcatttctca 78  Q
    |||||||||||||||||||  |||||||||||||||||    
T  2482709 aagttgtcacaaaatggatgtacaaatatcatttctca 2482746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 30580208 - 30580131
Alignment:
Q  2 aagagaaaaaataagatgataatatgagcatgatagatgaagttgtcacaaaatggatacacaaatatcatttctcat 79  Q
    |||||||||| ||| |  |||||||||| |||| |||| ||||||||| ||||||| |  | ||||||||||||||||    
T  30580208 aagagaaaaagtaaaaacataatatgagtatgaaagataaagttgtcataaaatggttgtataaatatcatttctcat 30580131  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36318266 - 36318342
Alignment:
Q  1 gaagagaaaaaataagatgataatatgagcatgatagatgaagttgtcacaaaatggatacacaaatatcatttctc 77  Q
    ||||||| | ||||| | ||||||||||| |||| |||  || |||||| ||| |||||| ||||||||||||||||    
T  36318266 gaagagagagaataaaaggataatatgagtatgagagagaaaattgtcaaaaagtggatatacaaatatcatttctc 36318342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 41405975 - 41405917
Alignment:
Q  108 gtaccccataacttggagttgtctcgtaccagaaaaatctaaaaagtatggtatttttg 166  Q
    ||||||||||||||| |||||| | |||||||||||||||||  |||| ||||||||||    
T  41405975 gtaccccataacttgaagttgtgtggtaccagaaaaatctaaccagtagggtatttttg 41405917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4738556 - 4738604
Alignment:
Q  1 gaagagaaaaaataagatgataatatgagcatgatagatgaagttgtca 49  Q
    ||||||| | |||||||||||||| |||| |||||||| ||||||||||    
T  4738556 gaagagagagaataagatgataatgtgagtatgatagaggaagttgtca 4738604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 25801807 - 25801875
Alignment:
Q  11 aataagatgataatatgagcatgatagatgaagttgtcacaaaatggatacacaaatatcatttctcat 79  Q
    |||||||  ||||| |||| |||| |||| ||||||||||||| ||| |  ||||||||||||||||||    
T  25801807 aataagagtataatgtgagtatgagagataaagttgtcacaaattggttgtacaaatatcatttctcat 25801875  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 29795523 - 29795447
Alignment:
Q  1 gaagagaaaaaataagatgataatatgagcatgatagatgaagttgtcacaaaatggatacacaaatatcatttctc 77  Q
    ||||||||| |||||||  ||||| |||| |||  |||  ||||||||||||||||| |  ||||||||||||||||    
T  29795523 gaagagaaagaataagagtataatgtgagtatgtgagagaaagttgtcacaaaatggttgtacaaatatcatttctc 29795447  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 39449303 - 39449267
Alignment:
Q  41 aagttgtcacaaaatggatacacaaatatcatttctc 77  Q
    ||||||||||||||||||||  |||||||||||||||    
T  39449303 aagttgtcacaaaatggatattcaaatatcatttctc 39449267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 32175942 - 32175904
Alignment:
Q  117 aacttggagttgtctcgtaccagaaaaatctaaaaagta 155  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  32175942 aacttggagttgtgtggtaccagaaaaatctaaaaagta 32175904  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 11223893 - 11223930
Alignment:
Q  40 gaagttgtcacaaaatggatacacaaatatcatttctc 77  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  11223893 gaagttgtcacaaaatggatgtacaaatatcatttctc 11223930  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 22706249 - 22706302
Alignment:
Q  26 tgagcatgatagatgaagttgtcacaaaatggatacacaaatatcatttctcat 79  Q
    |||| |||| |||| |||||||||| |||||||||  |||||||||||||||||    
T  22706249 tgagtatgagagataaagttgtcactaaatggatattcaaatatcatttctcat 22706302  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 28862075 - 28862141
Alignment:
Q  11 aataagatgataatatgagcatgatagatgaagttgtcacaaaatggatacacaaatatcatttctc 77  Q
    |||||||| |||||||||  |||| |||  ||||||||| |||||||||  ||||||||||||||||    
T  28862075 aataagataataatatgaatatgaaagagaaagttgtcataaaatggatgtacaaatatcatttctc 28862141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 42663120 - 42663082
Alignment:
Q  41 aagttgtcacaaaatggatacacaaatatcatttctcat 79  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  42663120 aagttgtcacaaaatggatgtacaaatatcatttctcat 42663082  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 22330615 - 22330691
Alignment:
Q  1 gaagagaaaaaataagatgataatatgagcatgatagatgaagttgtcacaaaatggatacacaaatatcatttctc 77  Q
    ||||||||| |||||||  ||||| |||| |||| |||  ||||||||||||| ||| |  ||||||||||||||||    
T  22330615 gaagagaaagaataagagaataatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctc 22330691  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 223514 - 223551
Alignment:
Q  41 aagttgtcacaaaatggatacacaaatatcatttctca 78  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  223514 aagttgtcacaaaatggatattcaaatatcatttctca 223551  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28549005 - 28549057
Alignment:
Q  1 gaagagaaaaaataagatgataatatgagcatgatagatgaagttgtcacaaa 53  Q
    ||||||| | |||||||||||| |||||| ||||||||  |||||||||||||    
T  28549005 gaagagagagaataagatgatagtatgagtatgatagagaaagttgtcacaaa 28549057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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