View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14473_low_54 (Length: 287)

Name: NF14473_low_54
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14473_low_54
NF14473_low_54
[»] chr1 (1 HSPs)
chr1 (1-287)||(44333456-44333742)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 44333742 - 44333456
Alignment:
Q  1 aagagacgcaaaccttttacatatatttatctgttgagatatttttccttagtaatttttgtagaatcaaaatcaaaaacagtttctgatccaaaaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44333742 aagagacgcaaaccttttacatatatttatctgttgagatatttttccttagtaatttttgtagaatcaaaatcaaaaacagtttctgatccaaaaacaa 44333643  T
Q  101 aagttgaannnnnnnn-gtaacatagagggtggtgcttgtgtaaaatttcctagaactcagaattgaaaagaaattcgaggttgaaagattttgttgcat 199  Q
    ||||||||         |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44333642 aagttgaaattttttttgtaacatagagggtggtgcttgtgtaaaatttctcagaactcagaattgaaaagaaattcgaggttgaaagattttgttgcat 44333543  T
Q  200 atcaaaagcatagttaaggttacatgtgattgatatattaaaagaaagnnnnnnnnnngtggcgcagcaaagggattcaggaaagttc 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||    
T  44333542 atcaaaagcatagttaaggttacatgtgattgatatattaaaagaaag-aaaaaaaaagtggcgcagcaaagggattcaggaaagttc 44333456  T

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