View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14473_low_59 (Length: 281)

Name: NF14473_low_59
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14473_low_59
NF14473_low_59
[»] chr1 (14 HSPs)
chr1 (18-273)||(6525341-6525596)
chr1 (174-271)||(6515064-6515161)
chr1 (168-270)||(6497714-6497816)
chr1 (155-270)||(6503035-6503150)
chr1 (174-273)||(6510674-6510773)
chr1 (20-86)||(6497520-6497586)
chr1 (38-84)||(47775326-47775372)
chr1 (38-84)||(47771228-47771274)
chr1 (18-86)||(6510501-6510569)
chr1 (18-66)||(47627678-47627726)
chr1 (23-78)||(6502882-6502937)
chr1 (18-84)||(47743708-47743774)
chr1 (18-84)||(47758109-47758175)
chr1 (37-81)||(6514919-6514963)
[»] scaffold0341 (4 HSPs)
scaffold0341 (174-273)||(12354-12453)
scaffold0341 (168-270)||(4728-4829)
scaffold0341 (18-86)||(12181-12249)
scaffold0341 (23-78)||(4561-4616)
[»] chr5 (4 HSPs)
chr5 (175-270)||(28828946-28829041)
chr5 (18-78)||(28859797-28859857)
chr5 (23-84)||(27368356-27368417)
chr5 (23-75)||(28854415-28854467)
[»] chr8 (1 HSPs)
chr8 (18-84)||(11225254-11225320)
[»] chr7 (1 HSPs)
chr7 (18-84)||(20167914-20167980)
[»] chr4 (1 HSPs)
chr4 (21-82)||(36437521-36437582)


Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 6525596 - 6525341
Alignment:
Q  18 taaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgcaaacaatacaaataattattctcaactaaataga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6525596 taaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgcaaacaatacaaataattattctcaactaaataga 6525497  T
Q  118 atctttccacaatcatgcatcttcggtcaatttatagcaactaatacttcttttgcatacttactaggttcccacaattctgtttgtattttcctgagtt 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6525496 atctttccacaatcatgcatcttcggtcaatttatagcaattaatacttcttttgcatacttactaggttcccacaattctgtttgtattttcctgagtt 6525397  T
Q  218 tggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6525396 tggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 6525341  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 174 - 271
Target Start/End: Original strand, 6515064 - 6515161
Alignment:
Q  174 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatc 271  Q
    ||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||    
T  6515064 atacttactaggttcccacaattctatttgtgttttcctgggtttggtccacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcatc 6515161  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 6497714 - 6497816
Alignment:
Q  168 ttttgcatacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggatt 267  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||| ||||| |||||||||||||| | ||||||||||||    
T  6497714 ttttgaatacttactaggttcccacaattctttttgtgttttcctgtgtttggtccacaccaaatagtcttgccatgccaaaatcagatatcttaggatt 6497813  T
Q  268 cat 270  Q
    |||    
T  6497814 cat 6497816  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 155 - 270
Target Start/End: Original strand, 6503035 - 6503150
Alignment:
Q  155 caactaatacttcttttgcatacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctg 254  Q
    |||| ||||||| ||||| || ||||||| |||||||||||||| ||||| |||||||| |||||||| ||| |||| ||||| |||||||||||||| |    
T  6503035 caaccaatactttttttgaatgcttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagtcttgccatgccaaaatcag 6503134  T
Q  255 ctatcttaggattcat 270  Q
    ||||||||||||||||    
T  6503135 ctatcttaggattcat 6503150  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 174 - 273
Target Start/End: Original strand, 6510674 - 6510773
Alignment:
Q  174 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 273  Q
    |||||||||| |||||||||||||| ||||| |||||||| |||||||| | |  ||| || || |||||||||||||| ||||||||||||||||||||    
T  6510674 atacttactaagttcccacaattctatttgtgttttcctgggtttggtcaatactaaaaagccttgccatgccaaaatcagctatcttaggattcatctc 6510773  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 6497520 - 6497586
Alignment:
Q  20 aatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgcaaa 86  Q
    |||||||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||||| ||||    
T  6497520 aatacatccgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactacaaa 6497586  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 47775372 - 47775326
Alignment:
Q  38 gaaaattgtccatgcattgcatactccggtgccatatatccactgca 84  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  47775372 gaaaattgtccatgcattgcatactcaggtgccatatatccactgca 47775326  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 47771274 - 47771228
Alignment:
Q  38 gaaaattgtccatgcattgcatactccggtgccatatatccactgca 84  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||    
T  47771274 gaaaattgtccatgcattgcatactcaggtgccatgtatccgctgca 47771228  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 6510501 - 6510569
Alignment:
Q  18 taaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgcaaa 86  Q
    |||| ||||| || || |||||||| ||||| |||||| ||||||| ||||||||||||||||| ||||    
T  6510501 taaagacatcggattttactgaaaactgtccttgcattacatactcaggtgccatatatccactacaaa 6510569  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 47627726 - 47627678
Alignment:
Q  18 taaatacatctgacttcactgaaaattgtccatgcattgcatactccgg 66  Q
    |||| ||||| |||||| ||||||||||||||||||||||||| |||||    
T  47627726 taaaaacatcagacttctctgaaaattgtccatgcattgcatattccgg 47627678  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 6502882 - 6502937
Alignment:
Q  23 acatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatcc 78  Q
    |||||||| || || ||||||||||| |||||| ||||||| ||||||||||||||    
T  6502882 acatctgattttaccgaaaattgtccgtgcattacatactcaggtgccatatatcc 6502937  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 47743708 - 47743774
Alignment:
Q  18 taaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 84  Q
    |||| |||||||| || || ||||||| ||||  |||||||||||| || |||||||||||||||||    
T  47743708 taaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccactgca 47743774  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 47758109 - 47758175
Alignment:
Q  18 taaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 84  Q
    |||| |||||||| || || ||||||| ||||  |||||||||||| || |||||||||||||||||    
T  47758109 taaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccactgca 47758175  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 6514919 - 6514963
Alignment:
Q  37 tgaaaattgtccatgcattgcatactccggtgccatatatccact 81  Q
    |||||||||||||||| | |||||||| ||||||||||| |||||    
T  6514919 tgaaaattgtccatgcctcgcatactctggtgccatatacccact 6514963  T

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Target: scaffold0341 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 174 - 273
Target Start/End: Original strand, 12354 - 12453
Alignment:
Q  174 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 273  Q
    |||||||||| |||||||||||||| ||||| |||||||| |||||||| | |  ||| || || |||||||||||||| ||||||||||||||||||||    
T  12354 atacttactaagttcccacaattctatttgtgttttcctgggtttggtcaatactaaaaagccttgccatgccaaaatcagctatcttaggattcatctc 12453  T

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Target: scaffold0341; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 4728 - 4829
Alignment:
Q  168 ttttgcatacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggatt 267  Q
    ||||| || ||||||| |||||||||||||| ||||| ||| |||| |||||||| ||| |||| ||||| |||||||||||||| ||||||||||||||    
T  4728 ttttgaatgcttactaagttcccacaattctatttgtgttt-cctgggtttggtcaacaccaaaaagtcttgccatgccaaaatcagctatcttaggatt 4826  T
Q  268 cat 270  Q
    |||    
T  4827 cat 4829  T

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Target: scaffold0341; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 12181 - 12249
Alignment:
Q  18 taaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgcaaa 86  Q
    |||| ||||| || || |||||||| ||||| |||||| ||||||| ||||||||||||||||| ||||    
T  12181 taaagacatcggattttactgaaaactgtccttgcattacatactcaggtgccatatatccactacaaa 12249  T

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Target: scaffold0341; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 4561 - 4616
Alignment:
Q  23 acatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatcc 78  Q
    |||||||| || || ||||||||||| |||||| ||||||| ||||||||||||||    
T  4561 acatctgattttaccgaaaattgtccgtgcattacatactcaggtgccatatatcc 4616  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 270
Target Start/End: Original strand, 28828946 - 28829041
Alignment:
Q  175 tacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcat 270  Q
    ||||||||||||||| ||||||||  |||||||| | || ||||| ||||||  ||  ||||| ||||||||||||||||||||||||| ||||||    
T  28828946 tacttactaggttccaacaattctacttgtatttgcttgtgtttgatccacaagaattagtcttgccatgccaaaatctgctatcttagcattcat 28829041  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 28859797 - 28859857
Alignment:
Q  18 taaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatcc 78  Q
    |||| |||||||| ||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  28859797 taaagacatctgatttcactgaaaattctccatgcattacatactcaggtgccatatatcc 28859857  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 27368356 - 27368417
Alignment:
Q  23 acatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 84  Q
    |||||||| || || ||||||| ||||||||| |||||||| ||||||||||||||||||||    
T  27368356 acatctgattttaccgaaaattctccatgcatcgcatactcaggtgccatatatccactgca 27368417  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 28854415 - 28854467
Alignment:
Q  23 acatctgacttcactgaaaattgtccatgcattgcatactccggtgccatata 75  Q
    |||||||| || |||||||||| |||||||||| ||||||| |||||||||||    
T  28854415 acatctgattttactgaaaattctccatgcattacatactcaggtgccatata 28854467  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 11225320 - 11225254
Alignment:
Q  18 taaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 84  Q
    |||| |||||||| || || ||||||| ||||  |||||||||||| || |||||||||||||||||    
T  11225320 taaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccactgca 11225254  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 20167914 - 20167980
Alignment:
Q  18 taaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 84  Q
    |||| |||||||| ||| |||||||| |||| |||||||||||||| || | |||||| ||||||||    
T  20167914 taaacacatctgatttctctgaaaatagtccttgcattgcatactcgggagacatatagccactgca 20167980  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 36437521 - 36437582
Alignment:
Q  21 atacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactg 82  Q
    ||||||| |||||||| ||||||||||| | ||| ||||||||||| | |||||| ||||||    
T  36437521 atacatcagacttcaccgaaaattgtccttccatggcatactccggagacatataaccactg 36437582  T

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