View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_low_63 (Length: 272)
Name: NF14473_low_63
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 42482278 - 42482032
Alignment:
| Q |
18 |
acaagatttaatcattcttctatttttagaattatgagtaaaatgaaattattttggttagcaattaatcactaaatgtgagtacaattctgaatttaaa |
117 |
Q |
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| T |
42482278 |
acaagatttaatcattcttctatttttagaattatgagtaaaatgaaattatttaggttagaaattaatcactaaatgtgagtacaattctgaatttaaa |
42482179 |
T |
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| Q |
118 |
tccaaaaggtggatctaaccacttctatccgatccaacccaactgcagatttctacgaatat-aatcttagggcaaatccaagtagctagagaaaagctg |
216 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42482178 |
tccaaaaggtggatctaaccacttctacccgatccaacccaactgcagatttctacgaatataaatcttagggcaaatccaagtagctagagaaaagctg |
42482079 |
T |
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| Q |
217 |
tggcacacactttgcactcaattgattgattttaataatagaataat |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42482078 |
tggcacacactttgcactcaattgattgattttaataatagaataat |
42482032 |
T |
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