View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14473_low_7 (Length: 527)
Name: NF14473_low_7
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 19 - 518
Target Start/End: Complemental strand, 42883546 - 42883048
Alignment:
| Q |
19 |
tggctatgagttgcttaagaaaattaaggtacttgccgcaaaatcttgtatattagtagtannnnnnn-cacaatatacagtattgctgcattatatata |
117 |
Q |
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| T |
42883546 |
tggctatgagttgcttaagaaaattaaggtacttgctgcaaaatcttgtatattagtattattttttttcacgatatacagtattgttgcattatatata |
42883447 |
T |
|
| Q |
118 |
tatgttatagtaacattaaccacccaaaattggatattattttcagcaatcatcaatgaaggaggttcctgttgtgatcatgtcatctgacaatatacca |
217 |
Q |
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| T |
42883446 |
g--gatatagtaacattaaccacccaaaattggatattattttcagcaatcatcaatgaaggaagttcctgttgtgatcatgtcatctgacaatatacca |
42883349 |
T |
|
| Q |
218 |
acaaggatcaacaagtaattatttgtctcaagcactaacaatgccatttatttttgtatcttgtatatttgtcgtttgtttaacctactcaatcattgtt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42883348 |
acaaggatcaacaagtaattatttgtctcaagcactagcaatgccatttatttttgtatcttgtatatttgtcttttgtttaacctactcaatcattgtt |
42883249 |
T |
|
| Q |
318 |
gtgctgaaaaaacaggtgtatggaagaaggggctcagatgttcttatcgaagcctgtcaaacaatctgatgtaaaacaactgataggccagctgatgaat |
417 |
Q |
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| T |
42883248 |
gtgctgaaaaaacaggtgtatggaagaaggggctcagatgttcttatcgaagcctgtcaaacaatctgatgtaaaacaactgataggccagctgatgaat |
42883149 |
T |
|
| Q |
418 |
ttgggaaggctccaaaagaattgaagcaagaagaaagcagtgcaagatatcaccctcaggccttaataagatatgtttaggactagaaatacatatcatt |
517 |
Q |
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| T |
42883148 |
ttgggaaggctccaaaagaattgaagcaagaagaaagcaatgcaagatatcacccttaggccttaataagatatgtttaggactagaaatacatatcatt |
42883049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 5018192 - 5018160
Alignment:
| Q |
20 |
ggctatgagttgcttaagaaaattaaggtactt |
52 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
5018192 |
ggctatgagttacttaagaaaattaaggtactt |
5018160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 42663644 - 42663676
Alignment:
| Q |
20 |
ggctatgagttgcttaagaaaattaaggtactt |
52 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
42663644 |
ggctatgagttacttaagaaaattaaggtactt |
42663676 |
T |
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