View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14473_low_72 (Length: 236)
Name: NF14473_low_72
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14473_low_72 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 35355778 - 35355985
Alignment:
| Q |
9 |
ggtagattatactcacttttagaagtcacatttcagcttttaaatgtaactaatcatgactatgtttagcaatttcattcgatttatatttcttctagga |
108 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35355778 |
ggtagattgcactcacttttagaagtcacatttcagcttttaaatgtaactaatcatgactatgtttagcaatttcattcgatttatatttcttctagga |
35355877 |
T |
|
| Q |
109 |
ttttccctatcaaccaagtaggacaattggatatttgtagcacatttcgtcttttgttctgtctctagcctaaacaaaggttaggattgatatttttgga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
35355878 |
ttttccctatcaaccaagtaggacaattggatatttgtagcacatttcgtcttttgttctgtctctagcctaaacaaaggttaggaataatatttttgga |
35355977 |
T |
|
| Q |
209 |
gaaatgtt |
216 |
Q |
| |
|
|||||||| |
|
|
| T |
35355978 |
gaaatgtt |
35355985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 184
Target Start/End: Original strand, 35360070 - 35360244
Alignment:
| Q |
9 |
ggtagattatactcacttttagaagtcacatttcagcttttaaatgtaactaatcatgactatgtttagcaatttcattcgatttatatttcttctagga |
108 |
Q |
| |
|
|||| |||| |||| |||||||||||||||||||||| |||| ||||||||||||||| | |||||| |||||||||||| |||||||||| || ||||| |
|
|
| T |
35360070 |
ggtaaattacactctcttttagaagtcacatttcagcctttagatgtaactaatcatggccatgtttggcaatttcattcaatttatattttttttagga |
35360169 |
T |
|
| Q |
109 |
ttttccctatcaaccaagtaggacaattggatatttgtagcacatttcgtcttttgttctgtctctagcctaaaca |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
35360170 |
ttttccctatcaaccaagtaggacaattggatatttgtagcacatttcgtctctt-ctctgtctctagcctaaaca |
35360244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University