View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14473_low_74 (Length: 235)

Name: NF14473_low_74
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14473_low_74
NF14473_low_74
[»] chr2 (4 HSPs)
chr2 (106-219)||(41900402-41900515)
chr2 (122-219)||(41900210-41900307)
chr2 (173-212)||(41899977-41900016)
chr2 (175-219)||(41900594-41900638)
[»] scaffold0879 (2 HSPs)
scaffold0879 (175-215)||(4641-4681)
scaffold0879 (173-209)||(4591-4627)
[»] chr4 (4 HSPs)
chr4 (175-215)||(24421093-24421133)
chr4 (127-209)||(24420619-24420701)
chr4 (172-209)||(24470970-24471007)
chr4 (173-209)||(24421147-24421183)
[»] chr1 (2 HSPs)
chr1 (175-220)||(11882012-11882057)
chr1 (175-220)||(11891246-11891291)


Alignment Details
Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 41900515 - 41900402
Alignment:
Q  106 tcaccacaacctaagcatgtctataagtctcctcctccaccatctgcaaaactacccctttcttacatctacaagtccccaccaccaccatccccatcac 205  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41900515 tcaccacaacctaagtatgtctataagtctcctcctccaccatctgcatcactacccctttcttacatctacaagtccccaccaccaccatccccatcac 41900416  T
Q  206 cacctccaccttat 219  Q
    ||||||||||||||    
T  41900415 cacctccaccttat 41900402  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 41900307 - 41900210
Alignment:
Q  122 atgtctataagtctcctcctccaccatctgcaaaactacccctttcttacatctacaagtccccaccaccaccatccccatcaccacctccaccttat 219  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41900307 atgtctacaagtctcctcctccaccatctgcatcactacccctttcttacatctacaagtccccaccaccaccatccccatcaccacctccgccttat 41900210  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 41900016 - 41899977
Alignment:
Q  173 tctacaagtccccaccaccaccatccccatcaccacctcc 212  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  41900016 tctacaagtccccaccaccaccttccccctcaccacctcc 41899977  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 41900638 - 41900594
Alignment:
Q  175 tacaagtccccaccaccaccatccccatcaccacctccaccttat 219  Q
    ||||| || |||||||||||||| || ||||||||||||||||||    
T  41900638 tacaaatctccaccaccaccatctccttcaccacctccaccttat 41900594  T

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Target: scaffold0879 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 4641 - 4681
Alignment:
Q  175 tacaagtccccaccaccaccatccccatcaccacctccacc 215  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  4641 tacaagtccccaccaccaccatccccatcaccccctccacc 4681  T

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Target: scaffold0879; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 4591 - 4627
Alignment:
Q  173 tctacaagtccccaccaccaccatccccatcaccacc 209  Q
    |||||||||| |||||||||||||||||||| |||||    
T  4591 tctacaagtcaccaccaccaccatccccatctccacc 4627  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 24421133 - 24421093
Alignment:
Q  175 tacaagtccccaccaccaccatccccatcaccacctccacc 215  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  24421133 tacaagtccccaccaccaccatccccatcaccccctccacc 24421093  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 24420701 - 24420619
Alignment:
Q  127 tataagtctcctcctccaccatctgcaaaactacccctttcttacatctacaagtccccaccaccaccatccccatcaccacc 209  Q
    ||||| |||||||||||||||||| |   || ||| | | | || ||||||||||| ||||||||||||||||| ||||||||    
T  24420701 tataaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccacc 24420619  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 24470970 - 24471007
Alignment:
Q  172 atctacaagtccccaccaccaccatccccatcaccacc 209  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  24470970 atctacaagtcaccaccaccaccatccccttcaccacc 24471007  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 24421183 - 24421147
Alignment:
Q  173 tctacaagtccccaccaccaccatccccatcaccacc 209  Q
    |||||||||| |||||||||||||||||||| |||||    
T  24421183 tctacaagtcaccaccaccaccatccccatctccacc 24421147  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 11882012 - 11882057
Alignment:
Q  175 tacaagtccccaccaccaccatccccatcaccacctccaccttatt 220  Q
    |||||||||||||| |||||||| ||||| || |||||||||||||    
T  11882012 tacaagtccccacctccaccatcaccatcccctcctccaccttatt 11882057  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 11891246 - 11891291
Alignment:
Q  175 tacaagtccccaccaccaccatccccatcaccacctccaccttatt 220  Q
    |||||||||||||| |||||||| ||||| || |||||||||||||    
T  11891246 tacaagtccccacctccaccatcaccatcccctcctccaccttatt 11891291  T

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