View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14473_low_83 (Length: 205)

Name: NF14473_low_83
Description: NF14473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14473_low_83
NF14473_low_83
[»] chr4 (15 HSPs)
chr4 (1-205)||(5551650-5551854)
chr4 (1-177)||(5854572-5854748)
chr4 (1-205)||(5557415-5557619)
chr4 (1-205)||(5612016-5612220)
chr4 (6-205)||(5896642-5896841)
chr4 (3-177)||(5887819-5887993)
chr4 (1-177)||(3747397-3747573)
chr4 (6-175)||(5856556-5856725)
chr4 (1-175)||(5603898-5604072)
chr4 (1-169)||(5849605-5849772)
chr4 (9-205)||(5890851-5891047)
chr4 (2-205)||(5563201-5563404)
chr4 (1-159)||(5572772-5572930)
chr4 (1-159)||(5584979-5585137)
chr4 (66-158)||(253359-253449)
[»] chr8 (1 HSPs)
chr8 (6-172)||(1481645-1481811)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-103; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 5551650 - 5551854
Alignment:
Q  1 aggaaaggttcaaataaaaaaggaatgataagcttgcaagttgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaaccgttt 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5551650 aggaaaggttcaaataagaaaggaatgataagcttgcaagttgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaactgttt 5551749  T
Q  101 caggttcccaatagttgatgggatttcaccggagataccattgttcgaaaagttgagaacatggattgctttgaattctatcagaacctgtggtatcggt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  5551750 caggttcccaatagttgatgggatttcaccggagataccattgttcgaaaagttgagaacatggattgctttgaattccatcagaacctgtggtattggt 5551849  T
Q  201 ccttc 205  Q
    |||||    
T  5551850 ccttc 5551854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 5854748 - 5854572
Alignment:
Q  1 aggaaaggttcaaataaaaaaggaatgataagcttgcaagttgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaaccgttt 100  Q
    ||||||||||||||||| | |||||  | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5854748 aggaaaggttcaaataagagaggaacaacaagcttgccagttgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaactgttt 5854649  T
Q  101 caggttcccaatagttgatgggatttcaccggagataccattgttcgaaaagttgagaacatggattgctttgaatt 177  Q
    ||||||||| |||||||||||||||||||| |||| | ||||||| ||||||||||||||||||| |||||||||||    
T  5854648 caggttcccgatagttgatgggatttcaccagagaaagcattgtttgaaaagttgagaacatggactgctttgaatt 5854572  T

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Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 5557415 - 5557619
Alignment:
Q  1 aggaaaggttcaaataaaaaaggaatgataagcttgcaagttgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaaccgttt 100  Q
    |||| |||||||||||| |||||||||| | ||||||||||||||| || ||| |||||||||| ||||||||||||||||| || ||||| ||| ||||    
T  5557415 aggagaggttcaaataagaaaggaatgacatgcttgcaagttgcactggaatttcaccaaccaatgagttatttgagaggtccaaggactccaactgttt 5557514  T
Q  101 caggttcccaatagttgatgggatttcaccggagataccattgttcgaaaagttgagaacatggattgctttgaattctatcagaacctgtggtatcggt 200  Q
    |||||||||||||||||||||||||||||| |||| | ||||||| ||||||||||||||||||||||||||||| || || || || | |||||| |||    
T  5557515 caggttcccaatagttgatgggatttcaccagagagagcattgtttgaaaagttgagaacatggattgctttgaagtccattagcacatctggtattggt 5557614  T
Q  201 ccttc 205  Q
    |||||    
T  5557615 ccttc 5557619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 5612016 - 5612220
Alignment:
Q  1 aggaaaggttcaaataaaaaaggaatgataagcttgcaagttgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaaccgttt 100  Q
    ||||||| ||||||||| |||||||||| | |||||||||||||| ||| ||| |||||||||||||||| ||||||| ||| || ||||||||| ||||    
T  5612016 aggaaagtttcaaataagaaaggaatgacatgcttgcaagttgcagaggaatttcaccaaccaaggagttgtttgagaagtccaaggactctaactgttt 5612115  T
Q  101 caggttcccaatagttgatgggatttcaccggagataccattgttcgaaaagttgagaacatggattgctttgaattctatcagaacctgtggtatcggt 200  Q
    |||||||||||||||||||||||||||||  |||| | ||||||| |||||||||||||||||||||||||||||||  |||||  ||| |||||| |||    
T  5612116 caggttcccaatagttgatgggatttcacaagagaaagcattgtttgaaaagttgagaacatggattgctttgaatttcatcagcccctctggtattggt 5612215  T
Q  201 ccttc 205  Q
    |||||    
T  5612216 ccttc 5612220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 6 - 205
Target Start/End: Complemental strand, 5896841 - 5896642
Alignment:
Q  6 aggttcaaataaaaaaggaatgataagcttgcaagttgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaaccgtttcaggt 105  Q
    |||||||||||| |||||||||| || |||||||||||||| || ||| |||||||||| ||||||||||||||||| || |||||||   |||||||||    
T  5896841 aggttcaaataagaaaggaatgacaaacttgcaagttgcaccggaatttcaccaaccaaagagttatttgagaggtccaaggactctagttgtttcaggt 5896742  T
Q  106 tcccaatagttgatgggatttcaccggagataccattgttcgaaaagttgagaacatggattgctttgaattctatcagaacctgtggtatcggtccttc 205  Q
    |  ||||||||||||| ||||||||  ||| ||||||||||||||||||||||| |||||||||||||||||| ||||  || |||||||| ||||||||    
T  5896741 ttgcaatagttgatggaatttcaccatagaaaccattgttcgaaaagttgagaaaatggattgctttgaattccatcaacacatgtggtattggtccttc 5896642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 3 - 177
Target Start/End: Complemental strand, 5887993 - 5887819
Alignment:
Q  3 gaaaggttcaaataaaaaaggaatgataagcttgcaagttgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaaccgtttca 102  Q
    ||||||||||||||| |||||||||| | |||||||||||||| ||| ||| |||||||||||||||| ||||||||||| || ||||||||| ||||||    
T  5887993 gaaaggttcaaataacaaaggaatgacatgcttgcaagttgcagaggaatttcaccaaccaaggagttgtttgagaggtccaaggactctaactgtttca 5887894  T
Q  103 ggttcccaatagttgatgggatttcaccggagataccattgttcgaaaagttgagaacatggattgctttgaatt 177  Q
    ||||  |||||||| ||||||||||||| || | | ||||||| |||||||||| |||| ||| |||||| ||||    
T  5887893 ggtttgcaatagttaatgggatttcaccagaaaaatcattgtttgaaaagttgaaaacaaggagtgctttaaatt 5887819  T

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Target: chr4; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 3747397 - 3747573
Alignment:
Q  1 aggaaaggttcaaataaaaaaggaatgataagcttgcaagttgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaaccgttt 100  Q
    |||| |||||||||||  ||||||| || ||||| ||||||||||  || ||| |||||||||| ||||||||||||||||| || ||||||||| ||||    
T  3747397 aggagaggttcaaatatgaaaggaaggacaagctggcaagttgcatgggaatttcaccaaccaatgagttatttgagaggtccaaggactctaactgttt 3747496  T
Q  101 caggttcccaatagttgatgggatttcaccggagataccattgttcgaaaagttgagaacatggattgctttgaatt 177  Q
    || ||| || ||||||||||| |||||||| |||| |   ||||| |||||||||||||||||||||||||||||||    
T  3747497 caagtttcctatagttgatggaatttcaccagagagattgttgtttgaaaagttgagaacatggattgctttgaatt 3747573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 175
Target Start/End: Original strand, 5856556 - 5856725
Alignment:
Q  6 aggttcaaataaaaaaggaatgataagcttgcaagttgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaaccgtttcaggt 105  Q
    |||||||| ||| |||||||||| |  |||||||||||||  || ||| |||||| ||| |||||||||||||||||||||||||| ||| |||||| ||    
T  5856556 aggttcaagtaagaaaggaatgacagacttgcaagttgcatgggaatttcaccaatcaaagagttatttgagaggtctaatgactccaactgtttcaagt 5856655  T
Q  106 tcccaatagttgatgggatttcaccggagataccattgttcgaaaagttgagaacatggattgctttgaa 175  Q
    | |||||||  |||||||||||||| |||| || |||||| ||||||||||||||||| | |||||||||    
T  5856656 ttccaatagaagatgggatttcacctgagagacaattgtttgaaaagttgagaacatgaagtgctttgaa 5856725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 5603898 - 5604072
Alignment:
Q  1 aggaaaggttcaaataaaaaaggaatgataagcttgcaagttgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaaccgttt 100  Q
    |||| ||||||||  || |||||||||| | ||||||||  |||||||| ||| |||||||||   |||||||||||||||| || ||||| ||| ||||    
T  5603898 aggagaggttcaaggaagaaaggaatgacaggcttgcaatctgcacaggaattccaccaaccagaaagttatttgagaggtccaaagactccaactgttt 5603997  T
Q  101 caggttcccaatagttgatgggatttcaccggagataccattgttcgaaaagttgagaacatggattgctttgaa 175  Q
    ||||||||||| ||||||||||||||||||  ||| ||||||||| ||||||||||||||||  | |||||||||    
T  5603998 caggttcccaacagttgatgggatttcaccatagagaccattgtttgaaaagttgagaacataaagtgctttgaa 5604072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 5849772 - 5849605
Alignment:
Q  1 aggaaaggttcaaataaaaaaggaatgataagcttgcaagttgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaaccgttt 100  Q
    |||| |||||||||||| |||||||  | ||| ||||||  |||||||| ||| |||||||||| ||||||||||||||||| || ||||||| | ||||    
T  5849772 aggataggttcaaataagaaaggaagaacaagtttgcaaactgcacaggaatt-caccaaccaaagagttatttgagaggtccaaggactctagctgttt 5849674  T
Q  101 caggttcccaatagttgatgggatttcaccggagataccattgttcgaaaagttgagaacatggattgc 169  Q
    || |||  |||||||||||||||||||||| || | | ||||||| |||||||||||||||||||||||    
T  5849673 caagttttcaatagttgatgggatttcaccagaaaaaacattgtttgaaaagttgagaacatggattgc 5849605  T

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Target: chr4; HSP #11
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 9 - 205
Target Start/End: Complemental strand, 5891047 - 5890851
Alignment:
Q  9 ttcaaataaaaaaggaatgataagcttgcaagttgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaaccgtttcaggttcc 108  Q
    ||||||||| |||||||||| | ||||||||| |||||||| ||| |||||||||| ||||||||||||||||| || ||||||| | |||  ||| |      
T  5891047 ttcaaataagaaaggaatgacatgcttgcaagctgcacaggaatttcaccaaccaaagagttatttgagaggtccaaggactctatctgttctaggcttg 5890948  T
Q  109 caatagttgatgggatttcaccggagataccattgttcgaaaagttgagaacatggattgctttgaattctatcagaacctgtggtatcggtccttc 205  Q
    ||||||| || ||||||||||| || | | ||||||| ||||||||||||||||||| |||||| ||||  || || |||| |||||| ||||||||    
T  5890947 caatagtggaggggatttcaccagaaaaagcattgtttgaaaagttgagaacatggactgctttaaatttcattaggacctctggtattggtccttc 5890851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 2 - 205
Target Start/End: Original strand, 5563201 - 5563404
Alignment:
Q  2 ggaaaggttcaaataaaaaaggaatgataagcttgcaagttgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaaccgtttc 101  Q
    ||||||||||||  || |||||||||| | ||||||||  |||||||| ||   ||||||||  ||||||||||||||||| || ||||| ||| |||||    
T  5563201 ggaaaggttcaagaaagaaaggaatgacaggcttgcaatctgcacaggaatcttaccaaccagagagttatttgagaggtccaaggactccaactgtttc 5563300  T
Q  102 aggttcccaatagttgatgggatttcaccggagataccattgttcgaaaagttgagaacatggattgctttgaattctatcagaacctgtggtatcggtc 201  Q
    |||||||| ||||||||||| |||||||| |||| | ||||||| ||||||||||||||||  | ||||||||| || ||||| || | |||||  ||||    
T  5563301 aggttcccgatagttgatggaatttcaccagagagagcattgtttgaaaagttgagaacataaagtgctttgaagtccatcagcacatttggtagtggtc 5563400  T
Q  202 cttc 205  Q
    ||||    
T  5563401 cttc 5563404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 5572930 - 5572772
Alignment:
Q  1 aggaaaggttcaaataaaaaaggaatgataagcttgcaagttgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaaccgttt 100  Q
    ||||||||||||||||  ||||||| || |||||| | || |||||||| ||| |||||  ||| | |||||||||||||||||| ||||| ||  ||||    
T  5572930 aggaaaggttcaaatatgaaaggaaggacaagctttctagctgcacaggaatttcaccagtcaaagtgttatttgagaggtctaaggactccaattgttt 5572831  T
Q  101 caggttcccaatagttgatgggatttcaccggagataccattgttcgaaaagttgagaa 159  Q
    || |||||| || |  |||||||||| ||| |||| ||  ||||| |||| ||||||||    
T  5572830 caagttccctatggaagatgggattttacctgagagacggttgtttgaaatgttgagaa 5572772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 5585137 - 5584979
Alignment:
Q  1 aggaaaggttcaaataaaaaaggaatgataagcttgcaagttgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaaccgttt 100  Q
    ||||||||||||||||  ||||||| || |||||| | || |||||||| ||| |||||  ||| | |||||||||||||||||| ||||| ||  ||||    
T  5585137 aggaaaggttcaaatatgaaaggaaggacaagctttctagctgcacaggaatttcaccagtcaaagtgttatttgagaggtctaaggactccaattgttt 5585038  T
Q  101 caggttcccaatagttgatgggatttcaccggagataccattgttcgaaaagttgagaa 159  Q
    || |||||| || |  |||||||||| ||| |||| ||  ||||| |||| ||||||||    
T  5585037 caagttccctatggaagatgggattttacctgagagacggttgtttgaaatgttgagaa 5584979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 253449 - 253359
Alignment:
Q  66 gagttatttgagaggtctaatgactctaaccgtttcaggttcccaatagttgatgggatttcaccggagataccattgttcgaaaagttgaga 158  Q
    |||||||||||||||||||| ||||||||  |||||| |||||| ||||  || |||||||| || |||  ||||||||| ||||||||||||    
T  253449 gagttatttgagaggtctaaggactctaattgtttcaagttccctatagaagacgggatttcgcctgag--accattgtttgaaaagttgaga 253359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 172
Target Start/End: Original strand, 1481645 - 1481811
Alignment:
Q  6 aggttcaaataaaaaaggaatgataagcttgcaagttgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaaccgtttcaggt 105  Q
    |||||||||||| |||| ||||| | || | |||  |||||||| |||  ||| | ||| |||||||||||||||||||| ||||||||| |||||||||    
T  1481645 aggttcaaataagaaagaaatgacatgcatacaatctgcacaggaattttaccgaacaaagagttatttgagaggtctaaggactctaactgtttcaggt 1481744  T
Q  106 tcccaatagttgatgggatttcaccggagataccattgttcgaaaagttgagaacatggattgcttt 172  Q
    |||||||||| ||||||||||||||||||| | ||||||| ||||||||||||||||||| ||||||    
T  1481745 tcccaatagtcgatgggatttcaccggagaaagcattgtttgaaaagttgagaacatggagtgcttt 1481811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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