View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14474_high_12 (Length: 433)
Name: NF14474_high_12
Description: NF14474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14474_high_12 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 179 - 433
Target Start/End: Complemental strand, 2983655 - 2983401
Alignment:
| Q |
179 |
gccatgttaagaagatcggagagtttctccgatttcacattcggttttgaagtttgagtctgttgtcgtttgtcgaaggaagaagctgctgatgaagaga |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2983655 |
gccatgttaagaagatcggagagtttctccgatttcacattcggttttgaagtttgagtctgttgtcgtttgtcgaaggaagaagctgctgatgaagaga |
2983556 |
T |
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| Q |
279 |
agtcttcagtgtcatcttcgttgaaagtgctacggcggcggtgattataacgggaggtggcgccgccgcagctgacggcgtggaagatgagacgacggag |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2983555 |
agtcttcagtgtcatcttcgttgaaagtgctacggcggcggtgattataacgggaggtggcgccaccgcagctgacggcgtggaagatgagacgacggag |
2983456 |
T |
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| Q |
379 |
agaggcgatggaaagggagttccagagacggaagtggtgggagaatgttggtggt |
433 |
Q |
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||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2983455 |
agaagcaatggaaagggagttccagagacggaagtggtgggagaatgttggtggt |
2983401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 2983814 - 2983717
Alignment:
| Q |
20 |
cctctgacttccaaattctccttagcgagcattctcacggtggtcgcagcttcacgccgcttcaccgaatcatcttcctcatgcaaatccttcacaag |
117 |
Q |
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| T |
2983814 |
cctctgacttccaaattctccttagcgagcattctcacggtggtcgcagcttcacgccgcttcaccgaatcatcttcctcatgcaaatccttcacaag |
2983717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 26495437 - 26495393
Alignment:
| Q |
55 |
cacggtggtcgcagcttcacgcc-gcttcaccgaatcatcttcct |
98 |
Q |
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| T |
26495437 |
cacggtggtcgcagcttctcgcccgcttcactgaatcatcttcct |
26495393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 52528633 - 52528713
Alignment:
| Q |
32 |
aaattctccttagcgagcattctcacggtggtcgcagcttcacgccgcttcaccgaatcatcttcctcatgcaaatccttc |
112 |
Q |
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| T |
52528633 |
aaattctccttagcgagcattctcacggtggtcgccgcttctcgccgcttcaccgaatcatcttcctcatgcaaatccttc |
52528713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 345 - 429
Target Start/End: Original strand, 52525706 - 52525790
Alignment:
| Q |
345 |
cgcagctgacggcgtggaagatgagacgacggagagaggcgatggaaagggagttccagagacggaagtggtgggagaatgttgg |
429 |
Q |
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|||||||||||||||||||| ||||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| |||| |
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| T |
52525706 |
cgcagctgacggcgtggaaggtgagacgacggaggaaggcaatggaaagggagtttcagagacggtagtggtgggagaatattgg |
52525790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 52528780 - 52528826
Alignment:
| Q |
179 |
gccatgttaagaagatcggagagtttctccgatttcacattcggttt |
225 |
Q |
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|||||||| ||||||||||| || |||||| |||||||||||||||| |
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| T |
52528780 |
gccatgttcagaagatcggaaagcttctccaatttcacattcggttt |
52528826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 37978996 - 37978913
Alignment:
| Q |
32 |
aaattctccttagcgagcattctcacggtggtcgcagcttcacgccgcttcaccgaatcatcttcctcatgcaaatccttcaca |
115 |
Q |
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| T |
37978996 |
aaattctccttagcgagcattctcatggtggtcgcagcttctcgccgcttcaacgaaacatcttcctcatgcaaatccttcaca |
37978913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 37978849 - 37978793
Alignment:
| Q |
179 |
gccatgttaagaagatcggagagtttctccgatttcacattcggttttgaagtttga |
235 |
Q |
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|||||||| ||||||||||| || ||||||||||| |||||| ||||||| |||||| |
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| T |
37978849 |
gccatgttcagaagatcggaaagcttctccgattttacattcagttttgaggtttga |
37978793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 400
Target Start/End: Original strand, 18941104 - 18941162
Alignment:
| Q |
342 |
cgccgcagctgacggcgtggaagatgagacgacggagagaggcgatggaaagggagttc |
400 |
Q |
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|||| ||||||||| ||||||||||||||| |||||| ||||| ||||| || |||||| |
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| T |
18941104 |
cgccacagctgacgacgtggaagatgagacaacggagggaggcaatggagagagagttc |
18941162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 13863337 - 13863430
Alignment:
| Q |
32 |
aaattctccttagcgagcattctcacggtggtcgcag----------cttcacgccgcttcaccgaatcatcttcctcatgcaaatccttcaca |
115 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13863337 |
aaattctccttagcaagcattctcacggtggtcgcagtttctcgcagcttctcgccgcttcaccgaatcatcttcctcatgcaaatccttcaca |
13863430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 13863476 - 13863522
Alignment:
| Q |
179 |
gccatgttaagaagatcggagagtttctccgatttcacattcggttt |
225 |
Q |
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|||||||| ||||||||||| || |||||| |||||||||||||||| |
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| T |
13863476 |
gccatgttcagaagatcggaaagcttctccaatttcacattcggttt |
13863522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 345 - 399
Target Start/End: Original strand, 44712333 - 44712387
Alignment:
| Q |
345 |
cgcagctgacggcgtggaagatgagacgacggagagaggcgatggaaagggagtt |
399 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||| |
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| T |
44712333 |
cgcagctgacggcgtggaagatgagacgacggagggaggcaatggagagagagtt |
44712387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 400
Target Start/End: Original strand, 16351940 - 16351982
Alignment:
| Q |
358 |
gtggaagatgagacgacggagagaggcgatggaaagggagttc |
400 |
Q |
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| T |
16351940 |
gtggaagatgagacgacggagggaggcgatggagagagagttc |
16351982 |
T |
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