View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14474_high_13 (Length: 427)
Name: NF14474_high_13
Description: NF14474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14474_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Complemental strand, 7006301 - 7005904
Alignment:
| Q |
19 |
gaatggagcaaccaagttggcggagacgcggttaacggtggcgacagaggcggaggagatcaaagccatttttcctactccttcttagttcaccaagtac |
118 |
Q |
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| T |
7006301 |
gaatggagcaaccaagttagcggagacgcggttaacggtggtgacagcggcggaggagatcaaagccatttttcctactccttcttagttcaccaagtac |
7006202 |
T |
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| Q |
119 |
tcaacttttgcttctactgcttattgcttcaactcaaacttgctatatataatagtaaaatttggatgttacttatctaatggtatggaattgaaaggat |
218 |
Q |
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| T |
7006201 |
tcaacttttgcttctactgcttattgcttcaactcaaacttgctatatataatagtaaaatttggatgttacttatctaatggtatggaattgaaaggat |
7006102 |
T |
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| Q |
219 |
tggtggctgaaaattatggaccgttggattgaataattatggatattacataatattggccacaaaagagctttaggttttgaaatggtagccttatcgt |
318 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7006101 |
tggtggctgtaaattttggaccgttggattgaataattatggatattacataatattggccacaaaagagctttaggttttgaaatggtagccttatcgt |
7006002 |
T |
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| Q |
319 |
taggtaccactatggtaatgccacgtggattttcctccataatcttatctcttcattggaagtgcacatgaatgtgtgattgtggtgaagttgatatt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7006001 |
taggtaccactatggtaatgccacgtggattttcctccataatcttatctcttcattggaagtgcacatgaatgtgtgattgtggtgaagttgatatt |
7005904 |
T |
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