View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14474_high_20 (Length: 293)
Name: NF14474_high_20
Description: NF14474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14474_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 32935731 - 32935462
Alignment:
| Q |
18 |
attaaaacaacataatcaccgcaatatcatgtaaagcaatagtattttacatcttcagttaggtaagcgaaagctgaagtaacaaaaagtttcttttgtc |
117 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32935731 |
attaaaacaacataatcaccgcactatcatgtaaagcaatagtattttacatcttcagttaggtaagcgaaagctgaagtaacaaaaagtttcttttgtc |
32935632 |
T |
|
| Q |
118 |
cactccctcctccaccattccatattccactgaaagtgcaactcgaatagggacatggatcattcactttaagaaccttaagaattatctctttgcattc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32935631 |
cactccctcctccaccattccatattccactgaaagtgcaactcgaatagggacatggatcattcactttaagaaccttaagaattatctctttgcattc |
32935532 |
T |
|
| Q |
218 |
atcaaagtttgagccagaagaaggggaaaaagccttgtactccactcctgaatatgtaaaggtccctttg |
287 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32935531 |
attaaagtttgagccagaagaaggggaaaaagccttgtactccactcctgaatatgtaaaggtccctttg |
32935462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 52 - 287
Target Start/End: Complemental strand, 32927436 - 32927199
Alignment:
| Q |
52 |
agcaatagtattttacatcttcagttaggtaagcgaaagctgaagtaacaaaaag-tttcttttgtccactccctcctccaccattccatattccactga |
150 |
Q |
| |
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||||||| | |||||||||||| |||| |||||| ||||| |||| ||||||||| ||| |||| ||| || |||||||||||||||||||| |||| | |
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| T |
32927436 |
agcaataatgttttacatcttcggttaagtaagcaaaagccgaagaaacaaaaagattttttttttccgcttcctcctccaccattccatatcccaccaa |
32927337 |
T |
|
| Q |
151 |
aagtgcaactcgaatagggacatggatcattcactttaagaaccttaagaattatctctttgcattcatcaaagtttgagccagaagaaggggaaaaagc |
250 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
32927336 |
aagtgcaattcgaatagggacatggatcattcactttaagaaccttaagagttatctctttgcattcatcaaagtttgagccagaagaagggggaaacac |
32927237 |
T |
|
| Q |
251 |
cttgtactccactcctgaat-atgtaaaggtccctttg |
287 |
Q |
| |
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||| || |||||||| |||| ||||||||||| ||||| |
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| T |
32927236 |
cttatattccactcccgaataatgtaaaggtcgctttg |
32927199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 117 - 275
Target Start/End: Complemental strand, 32943114 - 32942956
Alignment:
| Q |
117 |
ccactccctcctccaccattccatattccactgaaagtgcaactcgaatagggacatggatcattcactttaagaaccttaagaattatctctttgcatt |
216 |
Q |
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||||| ||||||||||| |||||||| |||| ||| | || || ||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32943114 |
ccacttcctcctccaccgttccatatcccaccaaaactacatttcccataaggacatggatcattcactttaagtgccttaagaattatctctttgcatt |
32943015 |
T |
|
| Q |
217 |
catcaaagtttgagccagaagaaggggaaaaagccttgtactccactcctgaatatgta |
275 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||| ||||| |||||| |||||||||||||| |
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|
| T |
32943014 |
catcaaagttggagccagaagcaggagaaaatgccttatactcctctcctgaatatgta |
32942956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 168 - 275
Target Start/End: Complemental strand, 32950244 - 32950137
Alignment:
| Q |
168 |
ggacatggatcattcactttaagaaccttaagaattatctctttgcattcatcaaagtttgagccagaagaaggggaaaaagccttgtactccactcctg |
267 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| ||| ||||| ||||| |||||| |||||| |
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| T |
32950244 |
ggacatggatcattcactttaagtgccttaagaattatctctttgcattcatcaaagttggggccagaagcaggagaaaatgccttatactcctctcctg |
32950145 |
T |
|
| Q |
268 |
aatatgta |
275 |
Q |
| |
|
|||||||| |
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|
| T |
32950144 |
aatatgta |
32950137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 65 - 216
Target Start/End: Complemental strand, 32924680 - 32924529
Alignment:
| Q |
65 |
tacatcttcagttaggtaagcgaaagctgaagtaacaaaaagtttcttttgtccactccctcctccaccattccatattccactgaaagtgcaactcgaa |
164 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||| | |||||||| | | |||||||| |||||||||||| |||| ||||||| ||||||||| || | |
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|
| T |
32924680 |
tacatcttcagctaggtaaaagaaagatgaagcagcaaaaagtattctctgtccacttcctcctccaccactccaaattccaccaaaagtgcaattctga |
32924581 |
T |
|
| Q |
165 |
tagggacatggatcattcactttaagaaccttaagaattatctctttgcatt |
216 |
Q |
| |
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||||||||||||| ||||| ||||||| ||| | ||| ||||| |||||||| |
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| T |
32924580 |
tagggacatggataattcaatttaagagcctcacgaactatctttttgcatt |
32924529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 215
Target Start/End: Complemental strand, 32912707 - 32912557
Alignment:
| Q |
65 |
tacatcttcagttaggtaagcgaaagctgaagtaacaaaaagtttcttttgtccactccctcctccaccattccatattccactgaaagtgcaactcgaa |
164 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||| | ||||||| | || |||||| | || ||||| |||||||| ||||||| ||||||||| | | |
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| T |
32912707 |
tacatcttcaggtaggtaaaagaaagatgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttga |
32912608 |
T |
|
| Q |
165 |
tagggacatggatcattcactttaagaaccttaagaattatctctttgcat |
215 |
Q |
| |
|
||||||||||||| |||| |||||| ||||| ||||||||| ||||||| |
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|
| T |
32912607 |
tagggacatggatagttcaatttaagtgccttacgaattatctttttgcat |
32912557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 216
Target Start/End: Complemental strand, 11824986 - 11824870
Alignment:
| Q |
100 |
caaaaagtttcttttgtccactccctcctccaccattccatattccactgaaagtgcaactcgaatagggacatggatcattcactttaagaaccttaag |
199 |
Q |
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|||||||||| | |||||||| ||||||||||||||||| ||||||| ||||||||| || ||| |||||||||| ||||| ||||||| ||| | | |
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| T |
11824986 |
caaaaagttttctctgtccacttcctcctccaccattccaaattccaccaaaagtgcaattctgataaggacatggataattcaatttaagagcctgatg |
11824887 |
T |
|
| Q |
200 |
aattatctctttgcatt |
216 |
Q |
| |
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|| ||||| |||||||| |
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|
| T |
11824886 |
aactatctttttgcatt |
11824870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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