View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14474_high_21 (Length: 282)

Name: NF14474_high_21
Description: NF14474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14474_high_21
NF14474_high_21
[»] chr1 (22 HSPs)
chr1 (19-266)||(35262947-35263196)
chr1 (53-255)||(35270406-35270610)
chr1 (72-259)||(35276531-35276712)
chr1 (68-266)||(35147351-35147540)
chr1 (75-262)||(35199926-35200113)
chr1 (68-266)||(35190359-35190548)
chr1 (89-254)||(35224921-35225086)
chr1 (53-258)||(35248242-35248447)
chr1 (89-257)||(35295848-35296016)
chr1 (68-266)||(45525454-45525649)
chr1 (92-236)||(8638909-8639056)
chr1 (157-235)||(35252152-35252230)
chr1 (89-248)||(35219069-35219231)
chr1 (157-237)||(35208211-35208289)
chr1 (192-247)||(35212077-35212132)
chr1 (159-257)||(34309427-34309525)
chr1 (192-238)||(35194604-35194650)
chr1 (194-247)||(35476415-35476468)
chr1 (159-224)||(45531643-45531708)
chr1 (192-256)||(35189422-35189486)
chr1 (186-246)||(35205014-35205074)
chr1 (115-244)||(35474028-35474156)
[»] chr3 (5 HSPs)
chr3 (203-246)||(23331914-23331957)
chr3 (192-236)||(899766-899810)
chr3 (197-241)||(53924271-53924315)
chr3 (194-256)||(17664560-17664622)
chr3 (194-256)||(19246963-19247025)
[»] chr2 (2 HSPs)
chr2 (203-256)||(33138612-33138665)
chr2 (207-259)||(18558741-18558792)
[»] chr7 (1 HSPs)
chr7 (159-256)||(38631962-38632059)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 35262947 - 35263196
Alignment:
Q  19 agaaacattattctgccaaccaagaca----accccttttgcatagtatagtaaatgctgcttaattgtgttatttaggcctaatttctattccttcaag 114  Q
    |||||||||||||||||||||||||||    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35262947 agaaacattattctgccaaccaagacacaagacccctt--gcatagtatagtaaatgctgcttaattgtgttatttaggcctaatttctattccttcaag 35263044  T
Q  115 aaagagaccactcttccaattaccagcctttatctccaacaaattcatctggacttcttcattttctatgcctaaactgaagaactcccccatctcaatc 214  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35263045 aaagagaccactcttccaattaccagcctttatctctaacaaattcatctggacttcttcattttctatgcctgaactgaagaactcccccatctcaatc 35263144  T
Q  215 tccaaccacccatcgcttctcacactaggacgttccaatcctactgctctgt 266  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35263145 tccaaccacccatcgcttctcacactaggacgttgcaatcctactgctctgt 35263196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 53 - 255
Target Start/End: Original strand, 35270406 - 35270610
Alignment:
Q  53 ttgcatagtatagtaaatgctgcttaattgtgttat--ttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctc 150  Q
    |||||||||  ||| |||| || |||||||||||||  |||||||||| |||||||||||||||||  ||||| ||||||||||||||| ||||| |||     
T  35270406 ttgcatagttcagtgaatgttggttaattgtgttatacttaggcctaacttctattccttcaagaactagacctctcttccaattaccaccctttgtctg 35270505  T
Q  151 caacaaattcatctggacttcttcattttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttcc 250  Q
     | || ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  35270506 tatcacattcatctggacttcttcattttctatgcctgaattgaagaactcccccatctcaatctccaaccacccatcacttctcacactaggacgttgc 35270605  T
Q  251 aatcc 255  Q
    |||||    
T  35270606 aatcc 35270610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 72 - 259
Target Start/End: Original strand, 35276531 - 35276712
Alignment:
Q  72 ctgcttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctggacttc 171  Q
    ||||||||| |||||| ||||||||||||| ||| |||||||||||||||||||||||||||   ||| |||||||||||| || ||||||||| |||||    
T  35276531 ctgcttaatggtgttacttaggcctaatttatatcccttcaagaaagagaccactcttccaa---ccaccctttatctccatcacattcatctgaacttc 35276627  T
Q  172 ttcattttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcctact 259  Q
    ||||  ||   ||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  35276628 ttcacatt---tgcctgaattgaagaactcccccatctcaatctccaaccacccatctcttctcacactaggacgttgcaatcctact 35276712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 68 - 266
Target Start/End: Original strand, 35147351 - 35147540
Alignment:
Q  68 aatgctgcttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctgga 167  Q
    |||| |||||||| || ||| |||||||||| |||||||||||||| ||||||||||||||||||||||      ||| |||||   | ||||||| |||    
T  35147351 aatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaagagaccactcttccaatta------tttgtctccttaacattcatcagga 35147444  T
Q  168 cttcttcattttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcctactgctctgt 266  Q
    | ||| ||| ||||| |||| || ||||   |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35147445 cgtctccatcttctaggcctgaattgaa---ctcccccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatcctactgctctgt 35147540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 75 - 262
Target Start/End: Original strand, 35199926 - 35200113
Alignment:
Q  75 cttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctggacttcttc 174  Q
    ||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||| |||||  | | | | |||||   | |||||| || ||||||||    
T  35199926 cttaattgtcttacttaggcctgacttctattccttcaagaaagagaccactcttcgaattataatcatctgtctcctttatattcatttgaacttcttc 35200025  T
Q  175 attttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcctactgct 262  Q
    || ||||  |||| || ||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  35200026 atcttcttcgcctgaattgaagaactccccgatttcaatctccaaccacccatcgcttctcacactagggcgttgcaatcctactgct 35200113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 266
Target Start/End: Original strand, 35190359 - 35190548
Alignment:
Q  68 aatgctgcttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctgga 167  Q
    |||| |||| ||| || ||| |||||||||| |||||||||||||||||||||||| ||||||||||||      ||| |||||   | |||||| ||||    
T  35190359 aatgttgctgaatggtcttacttaggcctaacttctattccttcaagaaagagacctctcttccaatta------tttgtctccttaacattcatttgga 35190452  T
Q  168 cttcttcattttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcctactgctctgt 266  Q
    |||| ||   ||||| |||| || |||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  35190453 cttcatc---ttctaggcctgaattgaagaactctccgatctcaatctccaaccacccatcacttctcacactaggacgttgcaatcctactgctctgt 35190548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 254
Target Start/End: Original strand, 35224921 - 35225086
Alignment:
Q  89 ttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctggacttcttcattttctatgccta 188  Q
    |||||||||| |||||||||||||| ||||| ||| |||||||||| |||| ||||||| || |  | | |||| ||||||||||||| ||||| ||||     
T  35224921 ttaggcctaacttctattccttcaacaaagaaacctctcttccaatgaccaccctttatatcaataacactcatttggacttcttcatcttctaggcctg 35225020  T
Q  189 aactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatc 254  Q
    || |||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||| |||||    
T  35225021 aaatgaagaactctcccatctcaatctctaaccagccatcgcttctcacattaggacgttgcaatc 35225086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 258
Target Start/End: Original strand, 35248242 - 35248447
Alignment:
Q  53 ttgcatagtatagtaaatgctgcttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctcca 152  Q
    |||||||||  ||| |||| ||||||||||| ||| ||||| |||| ||||||||||||||  |||||||   | |||   |||||| |||| |||||||    
T  35248242 ttgcatagttcagtgaatgttgcttaattgtattacttaggtctaacttctattccttcaaataagagacgtgtattctggttaccatccttcatctcca 35248341  T
Q  153 acaaa---ttcatctggacttcttcattttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttc 249  Q
      |||   ||||||| ||||||   |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||| || ||     
T  35248342 taaaaacattcatcttgacttc---attttctaggcctaaattgaagaactcccccatctcaatctcaaaccacccatcgcttctcacaatagaactttg 35248438  T
Q  250 caatcctac 258  Q
    |||||||||    
T  35248439 caatcctac 35248447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 257
Target Start/End: Complemental strand, 35296016 - 35295848
Alignment:
Q  89 ttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctggacttcttcattttctatgccta 188  Q
    |||||||||| |||||||||||||||||| | |||  ||||||  | |||| ||||| | ||||  | | |||| ||||||||||||| | ||| ||||     
T  35296016 ttaggcctaacttctattccttcaagaaataaacctgtcttcccctgaccaccctttgtatccataacactcatttggacttcttcatctactaagcctg 35295917  T
Q  189 aactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatccta 257  Q
    || |||||||||| |||||||||||||||||||||||||| ||||||||||||||  ||| ||||||||    
T  35295916 aattgaagaactctcccatctcaatctccaaccacccatcacttctcacactaggctgttgcaatccta 35295848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 68 - 266
Target Start/End: Original strand, 45525454 - 45525649
Alignment:
Q  68 aatgctgcttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctgga 167  Q
    |||| ||||||||||| |   |||||||||| |||||||||||||||||||| |   | |||    | ||||||||||||||| |  | | |||||||||    
T  45525454 aatgttgcttaattgtctaccttaggcctaacttctattccttcaagaaagaaattccccttggtctcaccagcctttatctcgataacactcatctgga 45525553  T
Q  168 cttcttcattttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcctactgctctgt 266  Q
    ||||||||||||| | |||| || ||||   ||| |||||||||||||||||||||||||| |||||||||| ||||||   |||||||||| ||||||    
T  45525554 cttcttcattttcaaggcctgaattgaa---ctctcccatctcaatctccaaccacccatcacttctcacaccaggacgcggcaatcctactactctgt 45525649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 8638909 - 8639056
Alignment:
Q  92 ggcctaatttctattccttcaagaaagagaccactcttccaatta---ccagcctttatctccaacaa-attcatctggacttcttcattttctatgcct 187  Q
    ||||||| |||||||||||||| ||||| ||| ||||||||| ||   ||| |||||||| |||  || | |||| ||||||||||||| ||||| ||||    
T  8638909 ggcctaacttctattccttcaacaaagaaacctctcttccaagtataaccatcctttatc-ccagtaatactcatttggacttcttcatcttctaagcct 8639007  T
Q  188 aaactgaagaactcccccatctcaatctccaaccacccatcgcttctca 236  Q
     || |||||||||| ||||||||| |||||||||||||||| |||||||    
T  8639008 gaattgaagaactctcccatctcagtctccaaccacccatcacttctca 8639056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 35252152 - 35252230
Alignment:
Q  157 attcatctggacttcttcattttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctc 235  Q
    |||||| |||| |||||||| ||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||    
T  35252152 attcatttggatttcttcatattctatgcctaaattgaagaactccccaatctcaatctcaaaccacccatcacttctc 35252230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 248
Target Start/End: Original strand, 35219069 - 35219231
Alignment:
Q  89 ttaggcctaatttctattccttcaagaaagagaccactcttccaatta---ccagcctttatctccaacaa-attcatctggacttcttcattttctatg 184  Q
    |||||||||| |||||||||||||| ||||| ||| |||||||||| |   ||| |||||||| |||  || | |||| ||||||||||||| |  || |    
T  35219069 ttaggcctaacttctattccttcaacaaagaaacctctcttccaataataaccatcctttatc-ccagtaatactcatttggacttcttcatctggtaag 35219167  T
Q  185 cctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgtt 248  Q
    ||| || |||||||||| ||||||||| | ||||||||| |||| ||||||| |||||||||||    
T  35219168 cctgaaatgaagaactctcccatctcagtttccaaccactcatcacttctcatactaggacgtt 35219231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 35208211 - 35208289
Alignment:
Q  157 attcatctggacttcttcattttctatgcc-taaactgaagaactcccccatctcaatctccaaccacccatcgcttctcac 237  Q
    ||||||||||||||||||   ||||| ||| | || ||||||||||||| ||||||||||||||||||||||||||||||||    
T  35208211 attcatctggacttcttc---ttctaggccatgaattgaagaactccccaatctcaatctccaaccacccatcgcttctcac 35208289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 35212077 - 35212132
Alignment:
Q  192 tgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgt 247  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||    
T  35212077 tgaagaactctcccatctcaatctccaaccacccatcacttctcacactcggacgt 35212132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 34309427 - 34309525
Alignment:
Q  159 tcatctggacttcttcattttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatccta 257  Q
    |||| |||| |||||||| ||| | || | || |||||||||| |||||||||||||||||||| ||||| ||||| ||| ||||||||| ||||||||    
T  34309427 tcatttggatttcttcatcttcaaggcttgaattgaagaactctcccatctcaatctccaaccatccatcacttcttacattaggacgttgcaatccta 34309525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 35194604 - 35194650
Alignment:
Q  192 tgaagaactcccccatctcaatctccaaccacccatcgcttctcaca 238  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  35194604 tgaagaactcccccatttcaatctccaaccacccatcgcttctcaca 35194650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 35476415 - 35476468
Alignment:
Q  194 aagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgt 247  Q
    |||||||| |||||||||||||||||||||||||| | ||||||||||||||||    
T  35476415 aagaactctcccatctcaatctccaaccacccatcacgtctcacactaggacgt 35476468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 45531643 - 45531708
Alignment:
Q  159 tcatctggacttcttcattttctatgcctaaactgaagaactcccccatctcaatctccaaccacc 224  Q
    |||| ||||||||||||||||| | |||| || |||||||||| ||||||||||||||| ||||||    
T  45531643 tcatatggacttcttcattttcaaggcctgaattgaagaactctcccatctcaatctcccaccacc 45531708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 35189422 - 35189486
Alignment:
Q  192 tgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcct 256  Q
    ||||||||||||||||  ||||||||||||||| ||| |||||||||| ||||| || |||||||    
T  35189422 tgaagaactcccccattccaatctccaaccacctatcacttctcacacaaggacattgcaatcct 35189486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 35205014 - 35205074
Alignment:
Q  186 ctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacg 246  Q
    ||||| |||| || || |||||||||||||||||||||||||| ||||||||| |||||||    
T  35205014 ctaaattgaaaaaatctcccatctcaatctccaaccacccatcacttctcacattaggacg 35205074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 244
Target Start/End: Original strand, 35474028 - 35474156
Alignment:
Q  115 aaagagaccactcttccaattaccagcctttatctccaacaaattcatctggacttcttcattttctatgcctaaactgaagaactcccccatctcaatc 214  Q
    ||||| |||||||||||||| |||| |||||||| | |  | | ||| ||| |||||| ||| ||||| ||||||| ||||||  || | |||||||||     
T  35474028 aaagaaaccactcttccaatgaccatcctttatcgcaataacactcagctgaacttctccatcttctaggcctaaattgaagatatctctcatctcaatg 35474127  T
Q  215 tccaaccacccatcgcttctcacactagga 244  Q
    |||||||| || ||| || |||||||||||    
T  35474128 tccaaccatccttcg-ttttcacactagga 35474156  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 23331914 - 23331957
Alignment:
Q  203 cccatctcaatctccaaccacccatcgcttctcacactaggacg 246  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  23331914 cccatctcaatctccaaccacccatcgcttctcacattaggacg 23331957  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 899810 - 899766
Alignment:
Q  192 tgaagaactcccccatctcaatctccaaccacccatcgcttctca 236  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||    
T  899810 tgaataactctcccatctcaatctccaaccacccatcgcttctca 899766  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 53924315 - 53924271
Alignment:
Q  197 aactcccccatctcaatctccaaccacccatcgcttctcacacta 241  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  53924315 aactcccccatctcaatctccaaccacccatcgctcctcaaacta 53924271  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 17664622 - 17664560
Alignment:
Q  194 aagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcct 256  Q
    ||||| || |||||||||||||||||||| ||||| | ||| ||||||||||||| |||||||    
T  17664622 aagaattctcccatctcaatctccaaccatccatcacatctaacactaggacgttgcaatcct 17664560  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 19247025 - 19246963
Alignment:
Q  194 aagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcct 256  Q
    ||||| || |||||||||||||||||||| ||||| | ||| ||||||||||||| |||||||    
T  19247025 aagaattctcccatctcaatctccaaccatccatcacatctaacactaggacgttgcaatcct 19246963  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 33138665 - 33138612
Alignment:
Q  203 cccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcct 256  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| | |||||||    
T  33138665 cccatctcaatctccaaccacccatcacttctcacagtaggacgctgcaatcct 33138612  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 18558792 - 18558741
Alignment:
Q  207 tctcaatctccaaccacccatcgcttctcacactaggacgttccaatcctact 259  Q
    |||||||||||||||||||||| | |||||||||||||| || ||||||||||    
T  18558792 tctcaatctccaaccacccatcacgtctcacactaggac-ttgcaatcctact 18558741  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 38631962 - 38632059
Alignment:
Q  159 tcatctggacttcttcattttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcct 256  Q
    ||||||||| |||||||| ||  | | || || |||||||||| ||||| | ||||||||||||||||||| |||| ||||||| ||||  |||||||    
T  38631962 tcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatatgaatctccaaccacccatcgtttcttacactagcacgtcgcaatcct 38632059  T

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