View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14474_high_22 (Length: 277)

Name: NF14474_high_22
Description: NF14474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14474_high_22
NF14474_high_22
[»] chr6 (34 HSPs)
chr6 (1-277)||(26059094-26059370)
chr6 (1-277)||(26079064-26079340)
chr6 (1-277)||(25486542-25486818)
chr6 (1-220)||(25514089-25514307)
chr6 (1-277)||(25582885-25583149)
chr6 (107-277)||(26146166-26146336)
chr6 (171-277)||(25548152-25548258)
chr6 (1-69)||(25548351-25548419)
chr6 (17-69)||(27589868-27589920)
chr6 (17-69)||(27674292-27674344)
chr6 (17-64)||(27695325-27695372)
chr6 (17-67)||(27715258-27715308)
chr6 (17-64)||(27682321-27682368)
chr6 (18-62)||(27607845-27607889)
chr6 (5-60)||(26638820-26638875)
chr6 (5-60)||(26744786-26744841)
chr6 (5-62)||(28795798-28795855)
chr6 (25-64)||(26626535-26626574)
chr6 (25-64)||(26732512-26732551)
chr6 (5-64)||(26876972-26877031)
chr6 (108-147)||(27607950-27607989)
chr6 (17-64)||(27657447-27657494)
chr6 (17-63)||(25077696-25077742)
chr6 (17-62)||(26659374-26659419)
chr6 (17-62)||(26765345-26765390)
chr6 (19-64)||(26888396-26888441)
chr6 (107-148)||(27589946-27589987)
chr6 (111-148)||(27674374-27674411)
chr6 (107-148)||(27682255-27682296)
chr6 (107-148)||(27715330-27715371)
chr6 (5-62)||(28789780-28789837)
chr6 (5-57)||(25077405-25077457)
chr6 (18-62)||(26805936-26805980)
chr6 (107-147)||(27657543-27657583)
[»] scaffold0349 (1 HSPs)
scaffold0349 (17-67)||(16636-16686)
[»] chr8 (2 HSPs)
chr8 (17-62)||(29270564-29270609)
chr8 (108-148)||(29270670-29270710)
[»] chr4 (6 HSPs)
chr4 (5-66)||(18686339-18686400)
chr4 (3-66)||(18652239-18652302)
chr4 (5-66)||(18720829-18720890)
chr4 (5-61)||(18676299-18676355)
chr4 (26-66)||(18696166-18696206)
chr4 (5-66)||(18728265-18728326)
[»] scaffold0277 (2 HSPs)
scaffold0277 (18-64)||(1415-1461)
scaffold0277 (5-62)||(10362-10419)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 26059370 - 26059094
Alignment:
Q  1 tcaatgaatctcacaccctcctccgtgttgcttttctccttccacacgtggattcccatttgtgtattttcgaatatctcttc-ctcatcgaaccaatca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||  |||||  ||||| |||| ||  ||||| |    
T  26059370 tcaatgaatctcacacccccctccatgttgcttttctccttccacacgtggattcccatttgcgtatttctgaataa-tcttctctcagcgtgccaataa 26059272  T
Q  100 tcatacctcaacttaaactccacatggttccattcctttttcaaaagtctttcaccgagttcattatcttgttccaattctatatgcaacaaagttgtat 199  Q
    | || |   |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26059271 taatcctgtaacttaaactccacatggatccattcatttttcaaaagtctttcaccgagttcattatcttgttccaattttatatgcaacaaagttgtat 26059172  T
Q  200 ggtcatccaacacagtttcatcatccactagctcaccgaattccccaatgaattcgtcgcaacttatctcttcttcat 277  Q
    |||  ||||||||||| |||||||||||||||||||||||||||| | | |||||||||||||||||||||| |||||    
T  26059171 ggttctccaacacagtgtcatcatccactagctcaccgaattccctagtcaattcgtcgcaacttatctctttttcat 26059094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 26079340 - 26079064
Alignment:
Q  1 tcaatgaatctcacaccctcctccgtgttgcttttctccttccacacgtggattcccatttgtgtattttcgaatatctcttc-ctcatcgaaccaatca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||  |||||  ||||| |||| ||  ||||| |    
T  26079340 tcaatgaatctcacacccccctccatgttgcttttctccttccacacgtggattcccatttgcgtatttctgaataa-tcttctctcagcgtgccaataa 26079242  T
Q  100 tcatacctcaacttaaactccacatggttccattcctttttcaaaagtctttcaccgagttcattatcttgttccaattctatatgcaacaaagttgtat 199  Q
    | || |   |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26079241 taatcctgtaacttaaactccacatggatccattcatttttcaaaagtctttcaccgagttcattatcttgttccaattttatatgcaacaaagttgtat 26079142  T
Q  200 ggtcatccaacacagtttcatcatccactagctcaccgaattccccaatgaattcgtcgcaacttatctcttcttcat 277  Q
    |||  ||||||||||| |||||||||||||||||||||||||||| | | |||||||||||||||||||||| |||||    
T  26079141 ggttctccaacacagtgtcatcatccactagctcaccgaattccctagtcaattcgtcgcaacttatctctttttcat 26079064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 25486818 - 25486542
Alignment:
Q  1 tcaatgaatctcacaccctcctccgtgttgcttttctccttccacacgtggattcccatttgtgtattttcgaatatctcttcctcatcgaacc---aat 97  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||   |||    
T  25486818 tcaatgaatctcacacccccctccgtgttgcttttctccttccacacgtggattccgatttgcgtgttttcgaatatcttttcctcatcgaaccccgaat 25486719  T
Q  98 catcatacctcaacttaaactccacatggttccattcctttttcaaaagtctttcaccgagttcattatcttgttccaattctatatgcaacaaagttgt 197  Q
     |  | ||| ||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||    
T  25486718 aacaacaccccaacttaaactccacatggatccattcatttttcaaaagtcttacaccgagttcattatcttcttccaattttatatgcaacaaagttgt 25486619  T
Q  198 atggtcatccaacacagtttcatcatccactagctcaccgaattccccaatgaattcgtcgcaacttatctcttcttcat 277  Q
    |||||||| ||| | ||| ||||  ||||||||| |||  ||||||||| |||||   | |||||||||||||| |||||    
T  25486618 atggtcattcaaaaaagtatcattgtccactagcacactaaattccccagtgaat---ttgcaacttatctctttttcat 25486542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 25514307 - 25514089
Alignment:
Q  1 tcaatgaatctcacaccctcctccgtgttgcttttctccttccacacgtggattcccatttgtgtattttcgaatatctcttcctcatcgaaccaatcat 100  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||   ||    
T  25514307 tcaattaatctcacacccccctccgtgttgcttttctccttccacacgtggattcccatttgcgtattttcgaatatcttttccgcatcgaaccacaaat 25514208  T
Q  101 catacctcaacttaaactccacatggttccattcctttttcaaaagtctttcaccgagttcattatcttgttccaattctatatgcaacaaagttgtatg 200  Q
    ||  || ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  25514207 cacccc-caacttaaactccacatgtatccattcatttttcaaaagtctttcaccgagttcattatcttcttccaattttatatgcaacaaagttgtatg 25514109  T
Q  201 gtcatccaacacagtttcat 220  Q
    || || ||||||||||||||    
T  25514108 gttattcaacacagtttcat 25514089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 25583149 - 25582885
Alignment:
Q  1 tcaatgaatctcacaccctcctccgtgttgcttttctccttccacacgtggattcccatttgtgtattttcgaatatctcttcctcatcgaaccaatcat 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||  ||            |||||||||||  ||    
T  25583149 tcaatgaatctcacacccccctccgtgttgcttttctccttccacacgtggattcccatttgcgtatttctga------------catcgaaccaaaaat 25583062  T
Q  101 catacctcaacttaaactccacatggttccattcctttttcaaaagtctttcaccgagttcattatcttgttccaattctatatgcaacaaagttgtatg 200  Q
     |  |   ||| |||||||||||||| ||||||| ||||||||||||||||||||  |||||||||||| |||||||| |||||||||||||||||||||    
T  25583061 aactctcaaacataaactccacatggatccattcatttttcaaaagtctttcaccaggttcattatcttcttccaattttatatgcaacaaagttgtatg 25582962  T
Q  201 gtcatccaacacagtttcatcatccactagctcaccgaattccccaatgaattcgtcgcaacttatctcttcttcat 277  Q
    || |||||||||||||| || |||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||    
T  25582961 gttatccaacacagttttattatccactagctcaccgaatttcccagtgaatacgtcgcaacttatctctttttcat 25582885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 107 - 277
Target Start/End: Complemental strand, 26146336 - 26146166
Alignment:
Q  107 tcaacttaaactccacatggttccattcctttttcaaaagtctttcaccgagttcattatcttgttccaattctatatgcaacaaagttgtatggtcatc 206  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| || |||    
T  26146336 tcaacttaaactccacatggatccattcctttttcaaaagtctttcaccgagttcattaccttcttccaattttatatgcaacaaagttgtatagttatc 26146237  T
Q  207 caacacagtttcatcatccactagctcaccgaattccccaatgaattcgtcgcaacttatctcttcttcat 277  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| |||||    
T  26146236 caacacagtttcatcatccactagcttaccgaattccccagtgaattcgtcgaaacttatctctttttcat 26146166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 171 - 277
Target Start/End: Complemental strand, 25548258 - 25548152
Alignment:
Q  171 ttccaattctatatgcaacaaagttgtatggtcatccaacacagtttcatcatccactagctcaccgaattccccaatgaattcgtcgcaacttatctct 270  Q
    |||||||| ||||||||| |||||||| |||| |||||||| |||||||||| ||||||||||||||||||| ||  |||||||||| |||| |||||||    
T  25548258 ttccaattttatatgcaaaaaagttgtgtggttatccaacaaagtttcatcacccactagctcaccgaattctccggtgaattcgtcacaacctatctct 25548159  T
Q  271 tcttcat 277  Q
    | |||||    
T  25548158 ttttcat 25548152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 25548419 - 25548351
Alignment:
Q  1 tcaatgaatctcacaccctcctccgtgttgcttttctccttccacacgtggattcccatttgtgtattt 69  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||| |||||||||||||| ||||||    
T  25548419 tcaatgaatctcacactcccctccatgttgcttttctccttccacacatggattcccatttgcgtattt 25548351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 27589868 - 27589920
Alignment:
Q  17 cctcctccgtgttgcttttctccttccacacgtggattcccatttgtgtattt 69  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  27589868 cctcctccgtgttgcttttctctttccacacgtggattcccatttgtgcattt 27589920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 27674292 - 27674344
Alignment:
Q  17 cctcctccgtgttgcttttctccttccacacgtggattcccatttgtgtattt 69  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  27674292 cctcctccgtgttgcttttctctttccacacgtggattcccatttgtgcattt 27674344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 27695325 - 27695372
Alignment:
Q  17 cctcctccgtgttgcttttctccttccacacgtggattcccatttgtg 64  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  27695325 cctcctccgtgttgcttttctcattccacacgtggattcccatttgtg 27695372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 27715258 - 27715308
Alignment:
Q  17 cctcctccgtgttgcttttctccttccacacgtggattcccatttgtgtat 67  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  27715258 cctcctccgtgttgcttttctcattccacacgtggactcccatttgtgtat 27715308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 27682368 - 27682321
Alignment:
Q  17 cctcctccgtgttgcttttctccttccacacgtggattcccatttgtg 64  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||    
T  27682368 cctcctccgtgttgcttttctcattccacacgtggattcccctttgtg 27682321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 27607845 - 27607889
Alignment:
Q  18 ctcctccgtgttgcttttctccttccacacgtggattcccatttg 62  Q
    |||||| |||||||||||||| |||||||||||||||||||||||    
T  27607845 ctcctctgtgttgcttttctcattccacacgtggattcccatttg 27607889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 26638875 - 26638820
Alignment:
Q  5 tgaatctcacaccctcctccgtgttgcttttctccttccacacgtggattcccatt 60  Q
    ||||| ||||| |||||||||||||||||||||||||  | |||||||||||||||    
T  26638875 tgaatatcacatcctcctccgtgttgcttttctcctttaaaacgtggattcccatt 26638820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 26744841 - 26744786
Alignment:
Q  5 tgaatctcacaccctcctccgtgttgcttttctccttccacacgtggattcccatt 60  Q
    ||||| ||||| |||||||||||||||||||||||||  | |||||||||||||||    
T  26744841 tgaatatcacatcctcctccgtgttgcttttctcctttaaaacgtggattcccatt 26744786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 28795855 - 28795798
Alignment:
Q  5 tgaatctcacaccctcctccgtgttgcttttctccttccacacgtggattcccatttg 62  Q
    ||||| |||||  |||||| | ||||||||||||||||| ||||||||||||||||||    
T  28795855 tgaatatcacattctcctctgcgttgcttttctccttcctcacgtggattcccatttg 28795798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 26626574 - 26626535
Alignment:
Q  25 gtgttgcttttctccttccacacgtggattcccatttgtg 64  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  26626574 gtgttgcttttctccttcaacacatggattcccatttgtg 26626535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 26732551 - 26732512
Alignment:
Q  25 gtgttgcttttctccttccacacgtggattcccatttgtg 64  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  26732551 gtgttgcttttctccttcaacacatggattcccatttgtg 26732512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 26877031 - 26876972
Alignment:
Q  5 tgaatctcacaccctcctccgtgttgcttttctccttccacacgtggattcccatttgtg 64  Q
    ||||| ||||| |||||||  || || ||||||||||| |||||||||||||||||||||    
T  26877031 tgaatatcacatcctcctctatgctgtttttctccttcaacacgtggattcccatttgtg 26876972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 27607950 - 27607989
Alignment:
Q  108 caacttaaactccacatggttccattcctttttcaaaagt 147  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  27607950 caacttaaactccacatggatccattcatttttcaaaagt 27607989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 27657447 - 27657494
Alignment:
Q  17 cctcctccgtgttgcttttctccttccacacgtggattcccatttgtg 64  Q
    |||| ||| |||||||||||| |||| |||||||||||||||||||||    
T  27657447 cctcatccatgttgcttttcttcttcaacacgtggattcccatttgtg 27657494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 25077742 - 25077696
Alignment:
Q  17 cctcctccgtgttgcttttctccttccacacgtggattcccatttgt 63  Q
    |||||||||||||||||| ||||||| ||| |||||||| |||||||    
T  25077742 cctcctccgtgttgctttactccttcaacatgtggattctcatttgt 25077696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 26659419 - 26659374
Alignment:
Q  17 cctcctccgtgttgcttttctccttccacacgtggattcccatttg 62  Q
    |||| ||||||||||||||||||||| |||| |||||||| |||||    
T  26659419 cctcatccgtgttgcttttctccttcaacacatggattccaatttg 26659374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 26765390 - 26765345
Alignment:
Q  17 cctcctccgtgttgcttttctccttccacacgtggattcccatttg 62  Q
    |||| ||||||||||||||||||||| |||| |||||||| |||||    
T  26765390 cctcatccgtgttgcttttctccttcaacacatggattccaatttg 26765345  T

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Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 26888441 - 26888396
Alignment:
Q  19 tcctccgtgttgcttttctccttccacacgtggattcccatttgtg 64  Q
    |||||||| |||| |||||||||| ||||||||||||| |||||||    
T  26888441 tcctccgtcttgcctttctccttcaacacgtggattccaatttgtg 26888396  T

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Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 27589946 - 27589987
Alignment:
Q  107 tcaacttaaactccacatggttccattcctttttcaaaagtc 148  Q
    |||||||||| ||||||||| ||||||| |||||||||||||    
T  27589946 tcaacttaaattccacatggatccattcatttttcaaaagtc 27589987  T

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Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 27674374 - 27674411
Alignment:
Q  111 cttaaactccacatggttccattcctttttcaaaagtc 148  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  27674374 cttaaactccacatggatccattcatttttcaaaagtc 27674411  T

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Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 27682296 - 27682255
Alignment:
Q  107 tcaacttaaactccacatggttccattcctttttcaaaagtc 148  Q
    |||||||||||||||||| | ||||||| |||||||||||||    
T  27682296 tcaacttaaactccacatagatccattcatttttcaaaagtc 27682255  T

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Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 27715330 - 27715371
Alignment:
Q  107 tcaacttaaactccacatggttccattcctttttcaaaagtc 148  Q
    |||||||||||||||||||| |||||||  ||||||||||||    
T  27715330 tcaacttaaactccacatggatccattcacttttcaaaagtc 27715371  T

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Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 28789837 - 28789780
Alignment:
Q  5 tgaatctcacaccctcctccgtgttgcttttctccttccacacgtggattcccatttg 62  Q
    ||||| |||||  |||||| | ||||||||||||||| | ||||||||||||||||||    
T  28789837 tgaatatcacattctcctctgcgttgcttttctccttactcacgtggattcccatttg 28789780  T

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Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 25077457 - 25077405
Alignment:
Q  5 tgaatctcacaccctcctccgtgttgcttttctccttccacacgtggattccc 57  Q
    ||||| ||||| |||| ||| |||||||||||||||||| ||| |||||||||    
T  25077457 tgaatatcacatcctcatccttgttgcttttctccttccgcacatggattccc 25077405  T

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Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 26805980 - 26805936
Alignment:
Q  18 ctcctccgtgttgcttttctccttccacacgtggattcccatttg 62  Q
    |||||||||||||||||||||| |  ||||||||||||| |||||    
T  26805980 ctcctccgtgttgcttttctccattaacacgtggattccgatttg 26805936  T

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Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 27657543 - 27657583
Alignment:
Q  107 tcaacttaaactccacatggttccattcctttttcaaaagt 147  Q
    ||||||||| |||||||||| ||||||| ||||||||||||    
T  27657543 tcaacttaagctccacatggatccattcatttttcaaaagt 27657583  T

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Target: scaffold0349 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 16686 - 16636
Alignment:
Q  17 cctcctccgtgttgcttttctccttccacacgtggattcccatttgtgtat 67  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  16686 cctcctccgtgttgcttttctcattccacacgtggactcccatttgtgtat 16636  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 29270564 - 29270609
Alignment:
Q  17 cctcctccgtgttgcttttctccttccacacgtggattcccatttg 62  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||    
T  29270564 cctcatccgtgttgcttttctcattccacacgtggattcccatttg 29270609  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 29270670 - 29270710
Alignment:
Q  108 caacttaaactccacatggttccattcctttttcaaaagtc 148  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  29270670 caacttaaactccacatggatccattcatttttcaaaagtc 29270710  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 18686339 - 18686400
Alignment:
Q  5 tgaatctcacaccctcctccgtgttgcttttctccttccacacgtggattcccatttgtgta 66  Q
    ||||| ||||| |||| | ||||||| |||||||||||||||||||||||||||||| ||||    
T  18686339 tgaatatcacatcctcattcgtgttgtttttctccttccacacgtggattcccatttctgta 18686400  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 18652239 - 18652302
Alignment:
Q  3 aatgaatctcacaccctcctccgtgttgcttttctccttccacacgtggattcccatttgtgta 66  Q
    ||||||| ||||| |||| | ||||||| ||||||||||| |||||||||||||||||| ||||    
T  18652239 aatgaatatcacatcctcattcgtgttgtttttctccttcaacacgtggattcccatttctgta 18652302  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 18720829 - 18720890
Alignment:
Q  5 tgaatctcacaccctcctccgtgttgcttttctccttccacacgtggattcccatttgtgta 66  Q
    ||||| ||||| |||| | ||||||| ||||||||||| |||||||||||||||||| ||||    
T  18720829 tgaatatcacatcctcattcgtgttgtttttctccttcaacacgtggattcccatttctgta 18720890  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 18676299 - 18676355
Alignment:
Q  5 tgaatctcacaccctcctccgtgttgcttttctccttccacacgtggattcccattt 61  Q
    ||||| ||||| |||| | ||||||| |||||||||| |||||||||||||||||||    
T  18676299 tgaatatcacatcctcattcgtgttgtttttctccttgcacacgtggattcccattt 18676355  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 18696166 - 18696206
Alignment:
Q  26 tgttgcttttctccttccacacgtggattcccatttgtgta 66  Q
    |||| ||||||||||||||||||||||||||||||| ||||    
T  18696166 tgttacttttctccttccacacgtggattcccatttctgta 18696206  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 18728265 - 18728326
Alignment:
Q  5 tgaatctcacaccctcctccgtgttgcttttctccttccacacgtggattcccatttgtgta 66  Q
    ||||| ||||| |||| | ||||||| |||||||||| | ||||||||||||||||| ||||    
T  18728265 tgaatatcacatcctcattcgtgttgtttttctccttgcgcacgtggattcccatttctgta 18728326  T

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Target: scaffold0277 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 1415 - 1461
Alignment:
Q  18 ctcctccgtgttgcttttctccttccacacgtggattcccatttgtg 64  Q
    |||||| | ||||||||||||| ||| ||||||||||||||||||||    
T  1415 ctcctctgcgttgcttttctccatcctcacgtggattcccatttgtg 1461  T

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Target: scaffold0277; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 10362 - 10419
Alignment:
Q  5 tgaatctcacaccctcctccgtgttgcttttctccttccacacgtggattcccatttg 62  Q
    ||||| |||||  |||||| | ||||||||||||||| | ||||||||||||||||||    
T  10362 tgaatatcacattctcctctgcgttgcttttctccttactcacgtggattcccatttg 10419  T

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