View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14474_high_23 (Length: 271)
Name: NF14474_high_23
Description: NF14474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14474_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 46033390 - 46033200
Alignment:
| Q |
17 |
agttaggactagtatgtacagttactaactagtatccaaaaagacgtgattgtgttgtattcctagagagatttgtatttaaatgtaaaatggttagttt |
116 |
Q |
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| T |
46033390 |
agttaggactagtatgtacagttactaactagtatccaaaaagacgtgattgtgttgtattcctagtgagatttgtatttaaatgtaaaatggttagttt |
46033291 |
T |
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| Q |
117 |
tgacttttaagtagtttgcgaaatgtgtaggaattttccttgaat---cttcctaaatttcctttttaaaacaaagcaggaattgatttga |
204 |
Q |
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| T |
46033290 |
tgacttttaagtagtttgcgaagtgtgtaggaattttccttgaatcttcttcctaaatttcctttttaaaacaaagcaggaattgatttga |
46033200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 46033173 - 46033136
Alignment:
| Q |
234 |
taaagaagaattgttgatttttcgccactacaagaaat |
271 |
Q |
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| T |
46033173 |
taaagaagaattgttgatttttcgccactacaagaaat |
46033136 |
T |
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