View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14474_high_3 (Length: 678)
Name: NF14474_high_3
Description: NF14474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14474_high_3 |
 | |
|
| [»] scaffold0710 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 5907169 - 5906690
Alignment:
| Q |
1 |
tattatcaatgatttaaatatatagagaaatttttgacaaggacgtagattaatttaaaatattaataaaatcatcaactaattcaaaaacgnnnnnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5907169 |
tattatcaatgatttaaatatatagagaaatttttgacaaggacgtagattaatttaaaatattaataaaatcatcaactaattcaaaaatgtttttttt |
5907070 |
T |
|
| Q |
101 |
nnn-----gtggtggtcagaatttgaattacgaaccttgcatattttatgtattgtacattctaactgaattatacgctcacaagaacaaatttaaaaat |
195 |
Q |
| |
|
||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
5907069 |
ttttttttgtgatggtcggaatttgaattaccaaccttgcatattttatgtattgtacattccaactgagttatacgctcacaagaacaa-tttaaaaat |
5906971 |
T |
|
| Q |
196 |
gacttacctatacacaaccaattttatggtttactcaaataaaccgtcgtaataactaaatttccctagtccagttttcctctccggctttagagacacc |
295 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5906970 |
gacttacctatacacaatcaattttatgatttactcaaataaaccgtcgtaataactaaatttccctagtccagttttcctctcgggctttagagacacc |
5906871 |
T |
|
| Q |
296 |
gctactctagtcagtctgactgggtggaagaatccgttgcaaacaacaacagataatattgcgttcactctcaagttcctctctttgtctctctcttatt |
395 |
Q |
| |
|
|||||||||||| | || | |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5906870 |
gctactctagtcgatatgtccgggtggaagaatccactgcaaacaacaacagacaatattgcgttcactctcaagttcctctctttgtgtctctcttatt |
5906771 |
T |
|
| Q |
396 |
aatttattggataaaataaatcaacattctttcgttctttctgggtttttcaatttttatctctagttaacaaagtgacgagtta |
480 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5906770 |
agtttattggataaaataaatcaacattctttcg----ttctggatttttcaatttttatctctagttaacaaagtgacgagtta |
5906690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 482 - 678
Target Start/End: Complemental strand, 5906585 - 5906389
Alignment:
| Q |
482 |
caagacaagaattatctatgttttggatttggaggtgaaaattggggatcattaggatataatatcaagtggcactagagcagttaagagttgttagata |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5906585 |
caagacaagaattatctatgttttggatttggaggtgaaaattggggatcattaggatataatatcaagtggcactagagcagttaagagttgttagata |
5906486 |
T |
|
| Q |
582 |
aaatatcaatgaaggttgactcagttcgtaaggagttgactcacccgcaaggttgtgtgttcaagaggactttttggtgggtgatctgtaaatacct |
678 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5906485 |
aaatatcaatgaaggctgactcagttcgtacggagttgactcacccacaaggttgtgtgttcaagaggatcttttggtgggtgatctgtaaatacct |
5906389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 588 - 638
Target Start/End: Complemental strand, 3025799 - 3025749
Alignment:
| Q |
588 |
caatgaaggttgactcagttcgtaaggagttgactcacccgcaaggttgtg |
638 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
3025799 |
caatgaatgttgactcagttagtaaggagttgactcacctacaaggttgtg |
3025749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 589 - 645
Target Start/End: Complemental strand, 33503057 - 33503001
Alignment:
| Q |
589 |
aatgaaggttgactcagttcgtaaggagttgactcacccgcaaggttgtgtgttcaa |
645 |
Q |
| |
|
||||||||||| ||||||| ||||||| |||||||||||| ||||| ||| |||||| |
|
|
| T |
33503057 |
aatgaaggttggctcagttggtaaggaattgactcacccgtaaggtagtgggttcaa |
33503001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 587 - 641
Target Start/End: Complemental strand, 2579674 - 2579620
Alignment:
| Q |
587 |
tcaatgaaggttgactcagttcgtaaggagttgactcacccgcaaggttgtgtgt |
641 |
Q |
| |
|
||||||||||||| |||| || |||||||||||||||||| ||||| |||||||| |
|
|
| T |
2579674 |
tcaatgaaggttggctcaattggtaaggagttgactcacctgcaagattgtgtgt |
2579620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 638
Target Start/End: Complemental strand, 51798589 - 51798540
Alignment:
| Q |
589 |
aatgaaggttgactcagttcgtaaggagttgactcacccgcaaggttgtg |
638 |
Q |
| |
|
|||||| |||||||||| ||| |||||||||||| ||||||||||||||| |
|
|
| T |
51798589 |
aatgaaagttgactcagctcgcaaggagttgacttacccgcaaggttgtg |
51798540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 6219705 - 6219655
Alignment:
| Q |
25 |
gagaaatttttgacaaggacgtagattaatttaaaatattaataaaatcat |
75 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
6219705 |
gagaaatttttgacaaagacagtgactaatttaaaatattaataaaatcat |
6219655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 587 - 624
Target Start/End: Complemental strand, 8125182 - 8125145
Alignment:
| Q |
587 |
tcaatgaaggttgactcagttcgtaaggagttgactca |
624 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
8125182 |
tcaatgaaggttgacttagttggtaaggagttgactca |
8125145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 638
Target Start/End: Complemental strand, 5678 - 5629
Alignment:
| Q |
589 |
aatgaaggttgactcagttcgtaaggagttgactcacccgcaaggttgtg |
638 |
Q |
| |
|
|||||| |||||||||| ||| |||||||||||| ||||||||||||||| |
|
|
| T |
5678 |
aatgaaagttgactcagctcgcaaggagttgacttacccgcaaggttgtg |
5629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 587 - 631
Target Start/End: Original strand, 36649295 - 36649339
Alignment:
| Q |
587 |
tcaatgaaggttgactcagttcgtaaggagttgactcacccgcaa |
631 |
Q |
| |
|
|||||||||||||||| |||| ||||| |||||| |||||||||| |
|
|
| T |
36649295 |
tcaatgaaggttgacttagttggtaagaagttgattcacccgcaa |
36649339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University