View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14474_high_5 (Length: 575)
Name: NF14474_high_5
Description: NF14474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14474_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 3 - 477
Target Start/End: Complemental strand, 31118319 - 31117841
Alignment:
| Q |
3 |
gaaaagtgaagtcgaaaatcaaagtataaaattaagaaggaattgagcaagaatcgcagtataaaattgacgcttaaaattaagcatgctatatatctga |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31118319 |
gaaaagtgaagtcgaaaatcaaagtataaaattaagaaggaattgagcaagaatcctagtataaaattgacgctgaaaattaagcatgctatatatctga |
31118220 |
T |
|
| Q |
103 |
tatgaagaaggaattgagcaagaatcgattgaaatttgaaagtgagaatgaaaccctaaacagagaagatagcgagagaataggtacgtacgtattcgca |
202 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| |
|
|
| T |
31118219 |
tattaagaaagaattgagcaagaatcgattgaaatttgaaagtgagaatgaaaccctaaacagagaagacaactagagaataggtacgtacgtattcgca |
31118120 |
T |
|
| Q |
203 |
gagaagttagagatcgtatttgaaaacgtgtatgccattttaaccttcaagatccactgtgagaaacgtacgtattcgtggacggccgtggtttcaatcg |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
31118119 |
gagaagttagagatcgtatttgaaaacgtgtttgccattttaaccttcaagatccactgtgagaaacgtacgtgttcgtgcacggccgtggtttcaatcg |
31118020 |
T |
|
| Q |
303 |
caacttccccacaccgtcgcaaacctctgcaggatgg---agaaaatggtttgtg-aagagacaaaatctgtgatttaattggttttaatcgtagccgtt |
398 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31118019 |
caacttccccacaccgtcgcaaacctgtgcaggatggagcagaaaatggtttgtgaaagagacaaaatctatgatttaattggttttaatcgtagccgtt |
31117920 |
T |
|
| Q |
399 |
ga----tctttaaaaagaaaggaaaggctaggattgcacaggagaagacatgagagaaacttcacgggagacaatccgctccc |
477 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
31117919 |
gacatgtctttaa----aaaggaaaggctaggattgcacaggagaagactggagagaaacttcacaggagacaatccgctccc |
31117841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 3 - 474
Target Start/End: Original strand, 50053831 - 50054307
Alignment:
| Q |
3 |
gaaaagtgaagtcgaaaatcaaagtataaaattaagaaggaattgagcaagaatcgcagtataaaattgacgcttaaaattaagcatgctatatatctga |
102 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
50053831 |
gaaaagtgaagtcgaaaatcgcagtataaaattaagaaggaattgagcaagaatcgcagtataaaattgacgccgaaaattaagcatgctatatatctga |
50053930 |
T |
|
| Q |
103 |
tatgaagaaggaattgagcaagaatcgattgaaatttgaaagtgagaatgaaaccctaaacagagaagatagcgagagaataggtacgtacgtattcgca |
202 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
50053931 |
tattaagaaggaattgagcaagaatcgattgaaatttgaaagtgagaatgaaaccctaaacagagaagacaacgagagaataggtacgtacgtattcgca |
50054030 |
T |
|
| Q |
203 |
gagaagttagagatcgtatttgaaaacgtgtatgccattttaaccttcaagatccactgtgagaaacgtacgtattcgtggacggccgtggtttcaatcg |
302 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
50054031 |
gagaagttagagattgtatttgaaaatgtgtttgccattttaaccttcaagatccactgtgagaaacg-acatattcgtgcacggccgtggtttcaatcg |
50054129 |
T |
|
| Q |
303 |
caacttccccacaccgtcgcaaacctctgcaggatgg---agaaaatggtttgtg-aagagacaaaatctgtgatttaattggttttaatcgtagccgtt |
398 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
50054130 |
caacttccccacaccgtcgcaaacctgtgcaggatggagcagaaaatggtttgtgaaagagacaaaatctgtgatttaattgattttaactgtagccgtt |
50054229 |
T |
|
| Q |
399 |
ga------tctttaaaaagaaaggaaaggctaggattgcacaggagaagacatgagagaaacttcacgggagacaatccgct |
474 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
50054230 |
gatatatgtctttaa----aaaggaaaggctaggattgcacatgagaagactggagagaaacttcaggggagacaatccgct |
50054307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 477 - 555
Target Start/End: Complemental strand, 26428378 - 26428300
Alignment:
| Q |
477 |
cctcaaacttccccttaattttctgatcccacaaactaccatgaggcagtgaagatgaaatcagttttatatcacagct |
555 |
Q |
| |
|
||||||||||| |||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26428378 |
cctcaaacttctccttaattttctcaacccacaaactactatgaggcagtgaagatgaaatcagttttatatcatagct |
26428300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 240; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 135 - 474
Target Start/End: Complemental strand, 40396532 - 40396187
Alignment:
| Q |
135 |
aatttgaaagtgagaatgaaaccctaaacagagaagatagcgagagaataggtacgtacgtattcgcagagaagttagagatcgtatttgaaaacgtgta |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40396532 |
aatttgaaagtgagaatgaaaccctaaacagagaagacagcgagagaataggtacgtacgtattcgcagagaagttagagatcgtatttgaaaatgtgtt |
40396433 |
T |
|
| Q |
235 |
tgccattttaaccttcaagatccactgtgagaaacgtacgtattcgtggacggccgtggtttcaatcgcaacttccccacaccgtcgcaaacctctgcag |
334 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40396432 |
tgccattttaaccttcaagatccgctgtgagaaatgtacgtattcgtgcacggccgtggtttcaatcgcaacttccccacaccgtcgcaaacctgtgcag |
40396333 |
T |
|
| Q |
335 |
gatgg---agaaaatggtttgtg-aagagacaaaatctgtgatttaattggttttaatcgtagccgttga------tctttaaaaagaaaggaaaggcta |
424 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| ||| |
|
|
| T |
40396332 |
gatggagcagaaaatggtttgtgaaagagacaaaatctgtgatttaattggttttaaccgtagccgttgatatatgtctttaa----aaaggaaagacta |
40396237 |
T |
|
| Q |
425 |
ggattgcacaggagaagacatgagagaaacttcacgggagacaatccgct |
474 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40396236 |
agattgcacaggagaagactggagagaaacttcacgggagacaatccgct |
40396187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 340 - 477
Target Start/End: Original strand, 42662309 - 42662447
Alignment:
| Q |
340 |
agaaaatggtttgtgaa-gagacaaaatctgtgatttaattggttttaatcgtagccgttga----tctttaaaaagaaaggaaaggctaggattgcaca |
434 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||| |||| |
|
|
| T |
42662309 |
agaaaatggtttgtgaaagagacaaaatctgtgatttaattgattttaatcgtagccgttgacatgtctttaa----aaaggaaaggctaggatttcaca |
42662404 |
T |
|
| Q |
435 |
ggagaagacatgagagaaacttcacgggagacaatccgctccc |
477 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42662405 |
ggagaagactggagagaaacttcacgggagacaatccgctccc |
42662447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 340 - 477
Target Start/End: Complemental strand, 42660116 - 42659977
Alignment:
| Q |
340 |
agaaaatggtttgtgaa-gagacaaaa-tctgtgatttaattggttttaatcgtagccgttga----tctttaaaaagaaaggaaaggctaggattgcac |
433 |
Q |
| |
|
||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
42660116 |
agaaaatggtttgtgaaagacacaaaaatctgtgatttaattggttttaatcgtagccgttgacatgtctttaa----aaaggaaaggctaggattgcac |
42660021 |
T |
|
| Q |
434 |
aggagaagacatgagagaaacttcacgggagacaatccgctccc |
477 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42660020 |
aggagaagaccggagagaaacttcacgggagacaatccgctccc |
42659977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 345 - 479
Target Start/End: Original strand, 14592008 - 14592146
Alignment:
| Q |
345 |
atggtttgtgaa-gagacaaaatctgtgatttaattggttttaatcgtagccgttgat----ctttaaaaagaaaggaaaggctaggattgcacaggaga |
439 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14592008 |
atggtttgtgaaagagacaaaatctgagatttaattggttttaatcatagccgttgatatgtctttaaaaagaa-ggaaaggctaggattgcacaggaga |
14592106 |
T |
|
| Q |
440 |
agacatgagagaaacttcacgggagacaatccgctcccct |
479 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||||||||| |
|
|
| T |
14592107 |
agactggagagaaacttcactggagacgatccgctcccct |
14592146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University