View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14474_high_6 (Length: 551)
Name: NF14474_high_6
Description: NF14474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14474_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 20 - 542
Target Start/End: Original strand, 42205346 - 42205874
Alignment:
| Q |
20 |
gcaaacactttttgcaaaaactacaaaagtgtatattcttaattagaaaagttagaagttgatgcacaataaactaaattgagtatgagtcatgacaaat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205346 |
gcaaacactttttgcaaaaactacaaaagtgtatattcttaattagaaaagttagaagttgatgcacaataaactaaattgagtatgagtcatgacaaat |
42205445 |
T |
|
| Q |
120 |
gtctaacatagatataaaatcaacaatatgatacttgaacattaatcgttttcatacactcattcaacaatgatcattatttttctatctctcttttcct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205446 |
gtctaacatagatataaaatcaacaatatgatacttgaacattaatcgttttcatacactcattcaacaatgatcattatttttctatctctcttttcct |
42205545 |
T |
|
| Q |
220 |
atcacatgattaacatatcatatctatcaaagtgtcgatggagacatggtcagtgt------gtgtgtgatacgcacctgtggccgcaacaagtagtaca |
313 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42205546 |
atcacatgattaacatatcatatctatcaaagtgtcgatggagacatggtcagtgtgtgtgtgtgtgtgatacgcacctgtggccgcaacaagtagtaca |
42205645 |
T |
|
| Q |
314 |
tggttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatcagcattgtaacttacatatcaacaatgtataaagctagattagaaaaaaca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205646 |
tggttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatcagcattgtaacttacatatcaacaatgtataaagctagattagaaaaaaca |
42205745 |
T |
|
| Q |
414 |
tcacaaggatttcattaccggacatgaaaacttctcggtgagttcatcggtgtaagggataacagcggacgacaaatcagaactcatcttgacgaaattt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205746 |
tcacaaggatttcattaccggacatgaaaacttctcggtgagttcatcggtgtaagggataacagcggacgacaaatcagaactcatcttgacgaaattt |
42205845 |
T |
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| Q |
514 |
ttcagagaaagcgacgtaccttttcttct |
542 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
42205846 |
ttcagagaaagcgacgtaccttttcttct |
42205874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 20 - 542
Target Start/End: Original strand, 42214214 - 42214742
Alignment:
| Q |
20 |
gcaaacactttttgcaaaaactacaaaagtgtatattcttaattagaaaagttagaagttgatgcacaataaactaaattgagtatgagtcatgacaaat |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214214 |
gcaaacactttttgcaaaaactacaaaagtgtatattcttaattagaaaagttagaagttgatgcacaataaactaaattgagtatgagtcatgacaaat |
42214313 |
T |
|
| Q |
120 |
gtctaacatagatataaaatcaacaatatgatacttgaacattaatcgttttcatacactcattcaacaatgatcattatttttctatctctcttttcct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214314 |
gtctaacatagatataaaatcaacaatatgatacttgaacattaatcgttttcatacactcattcaacaatgatcattatttttctatctctcttttcct |
42214413 |
T |
|
| Q |
220 |
atcacatgattaacatatcatatctatcaaagtgtcgatggagacatggtcagtgt------gtgtgtgatacgcacctgtggccgcaacaagtagtaca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42214414 |
atcacatgattaacatatcatatctatcaaagtgtcgatggagacatggtcagtgtgtgtgtgtgtgtgatacgcacctgtggccgcaacaagtagtaca |
42214513 |
T |
|
| Q |
314 |
tggttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatcagcattgtaacttacatatcaacaatgtataaagctagattagaaaaaaca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214514 |
tggttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatcagcattgtaacttacatatcaacaatgtataaagctagattagaaaaaaca |
42214613 |
T |
|
| Q |
414 |
tcacaaggatttcattaccggacatgaaaacttctcggtgagttcatcggtgtaagggataacagcggacgacaaatcagaactcatcttgacgaaattt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214614 |
tcacaaggatttcattaccggacatgaaaacttctcggtgagttcatcggtgtaagggataacagcggacgacaaatcagaactcatcttgacgaaattt |
42214713 |
T |
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| Q |
514 |
ttcagagaaagcgacgtaccttttcttct |
542 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
42214714 |
ttcagagaaagcgacgtaccttttcttct |
42214742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 31720948 - 31720906
Alignment:
| Q |
206 |
atctctcttttcctatcacatgattaacatatcatatctatca |
248 |
Q |
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|||||||||| |||||||||| |||||||||||| |||||||| |
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| T |
31720948 |
atctctctttacctatcacatcattaacatatcacatctatca |
31720906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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